Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_D09
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.042
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 32 0.13
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 30 0.52
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 29 0.90
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 1.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 29 1.2
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 2.1
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 3.6
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 4.8
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 8.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 8.4
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 33.5 bits (73), Expect = 0.042
Identities = 15/48 (31%), Positives = 33/48 (68%)
Frame = +1
Query: 334 AKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGE 477
+++ E DS + E E++ +E+++ E+S+E E+ + ESE+++E+ E
Sbjct: 78 SEDSESDSESSEEEEETESEEDS-EVSDESESESESESESEEESESEE 124
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 739 FRXLILICFARSFHFFDSFILRLFSSCFNHLFGNLFRFTIC 617
F +L+ ++ H FILRLF+ FN LF +LF + C
Sbjct: 131 FYIYVLLILSKRLHSI--FILRLFNDGFNSLFSSLFILSSC 169
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.9 bits (64), Expect = 0.52
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 262 VEQLADVDALKPQINGDAH---IHEQTAKEKELDSG-TPEN--EKDAT-TEKEAIEISNE 420
V+ +VD+L+PQ N D H A E +D T N E D T + E I ++N+
Sbjct: 320 VDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNND 379
Query: 421 KEAGPVTNGESEQK 462
E G N ESE +
Sbjct: 380 DENG---NNESENE 390
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 29.1 bits (62), Expect = 0.90
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 325 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEA 429
+QT KEK++DS + ENE ++ + E S + ++
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQS 142
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.90
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 626 EPEKVPEEVIEATAEQSQNETVEEVKTPSEANEDKXPE 739
EPE PE+ E + + +N+ VEE + + E PE
Sbjct: 384 EPESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPE 421
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +1
Query: 262 VEQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVT 441
V+ DA + DA E+ KE D G +DA+ + E+ E + G
Sbjct: 180 VDWAVSKDAFEATTLKDASSEEEN-KEFVSDEGHSIVTEDASADSESEEEVDGHSEGKEL 238
Query: 442 NGESEQKAENGESVTTTPD 498
GESE++ N + V + D
Sbjct: 239 AGESEEEGSNVDDVEDSGD 257
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 626 EPEKVPEEVIEATAEQSQNETVEEVKTPSEANEDKXPETPVTEPITNGHSTPETPQVE 799
+P +P+E T+ TVE V T ++ N+D+ VTE ++ + E ++
Sbjct: 432 QPANLPDEPTAETSNPVSATTVEAVTTTAD-NKDEEKNDHVTEDVSQNSTIAEASSLQ 488
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 265 EQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 444
EQ DV+ L ++ + T+KE D + EKE +E ++ E N
Sbjct: 6 EQTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEVQDEKELLEFLDQLENDEEKN 65
Query: 445 GES--EQKAENGESVTTTPDD 501
++ E+ E ESV T ++
Sbjct: 66 EKNPIEEANEENESVAATSNE 86
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +1
Query: 265 EQLADVDALKPQINGDAHIHEQ----TAKEKELDSGTPENEKDATTEKEAIEISNEKEAG 432
E++ D + P I D E AK E DS E D+T + + EK +
Sbjct: 162 EEVFDTEITNPVIPADEDDDEYQDLPAAKRHEGDS-IKSTEHDSTLDSGVVIDGREKSSS 220
Query: 433 PVTNGESEQKAENGESVTTTPD 498
+ ESEQ AE + + D
Sbjct: 221 ELHEEESEQAAEGDTAKNSGTD 242
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 136 RK*QRNYTDIGKTFTSSTHKPKQQISNNLNL 44
RK Q +Y +T TSS K + ++ +N+NL
Sbjct: 62 RKAQNHYYSPSRTHTSSIKKKRPKLCSNINL 92
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 301 INGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 444
+N DA++ EQ+ K E PE E++ K A NE V++
Sbjct: 297 VNSDANVVEQSEKTTEDADEEPETEENLDEFKPADGADNEDSKSLVSH 344
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 331 TAKEKELDSGTPENEKDATTEKEAIEISNEK-EAGPVTNGESEQKAENGESVTTT 492
+ KEKE D + EN + A N+K AG + E +G+S +T
Sbjct: 205 SGKEKENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKST 259
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 650 VIEATAEQSQNETVEEVKTPSEANEDKXPETPVT 751
++EA +++S E++ E+ S+ + P T VT
Sbjct: 155 LVEADSQESDTESLPEINDSSDVSLSDLPSTNVT 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,695
Number of Sequences: 5004
Number of extensions: 48628
Number of successful extensions: 295
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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