Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D07
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    36   0.006
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    30   0.51 
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    29   0.90 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    29   1.2  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    27   2.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   4.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   4.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   4.8  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
 Frame = +2

Query: 215 GKSIFITGATGFMGKVLVEKLLKSCPGLN-KLYLLMRPKKGQSSKERLDDFLGFKLFGPL 391
           G+   +TGATG+ G+  +E L+K    LN  +  L+R    +++KERL       L   L
Sbjct: 644 GQYFLLTGATGYFGRRFLEYLVK----LNISVVCLVRESSDEAAKERL-----ISLVPSL 694

Query: 392 QKENPKCFEKLHVVPGDILMDDLGISIADRELIQRECQVIFHCAACVRFDMFLRDAVNLN 571
           +  +    E + V    +     G+  A  E +      I+H AA V +    ++    N
Sbjct: 695 RISS----ENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPAN 750

Query: 572 TAATKRVLELA 604
              TK VLEL+
Sbjct: 751 VLGTKTVLELS 761


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 212 AGKSIFITGATGFMGKVLVEKLLKS 286
           +GK + +TG TGF+G  + E+LL++
Sbjct: 2   SGKLVLVTGVTGFIGAHVAEQLLQA 26


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 224 IFITGATGFMGKVLVEKLLKS 286
           IF+TGA GF+G  +V +LL++
Sbjct: 3   IFVTGAAGFIGSEIVRQLLEA 23


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +2

Query: 296 LNKLYLLMRPKKGQSSKERLDDFLGFKLFGPLQKENPKCFEKLHVVPGDILMDDLGISIA 475
           L  L +++  KKG S+ +R+  FL       LQ+++P+  + +  +   IL    G+   
Sbjct: 38  LRALNIILTVKKGNSNADRVLRFL-VTFVNYLQQKDPE-IDIVQPILKHILR---GLDAK 92

Query: 476 DRELIQRECQVIFHCAACVR 535
           D+ +  R CQ+I     CV+
Sbjct: 93  DKTVRYRCCQIIARVVNCVK 112


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 643 ITWMKASRLLKSLGELQHSLCSCRVQIDGVTQKHIESYA 527
           +T++   RL+ S G  Q   C+C V+++  +  H+++ A
Sbjct: 89  LTFILHERLISSRGVSQTCKCNCAVKLENESTVHLQNAA 127


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 501 HSRCISSLSAIDMPKSSISMSPGTT*SFSKHF 406
           HS   +SL A   P  S  + PG    + KHF
Sbjct: 669 HSSTPASLQATKTPSPSFVLEPGIPQEYKKHF 700


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 124 ELSSHKYFTYFKHKTCDPLRDSRSECQNLKDSL 26
           ELS  +   +FK K  + LRDS S+  +L + L
Sbjct: 598 ELSKQQIVEWFKSKLYEILRDSASKIDSLTEKL 630


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -1

Query: 453 SISMSPGTT*SFSKHFGFSFCSGPNNLNPRKSSNLSLLLCPFLGLINR*SLFKPGHDFNS 274
           S+ +SP T+ +  + F FS    P +L P  SSN           +N  +L +P    NS
Sbjct: 319 SLPISPSTSQNSVQPFPFSIQQPPLHLEPPLSSN----------TLNSSTLPQP----NS 364

Query: 273 FSTNTFPMKPVAP-VMKIDLP 214
              NTFP  P  P +   D+P
Sbjct: 365 TDFNTFPPLPSTPRISSEDIP 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,946
Number of Sequences: 5004
Number of extensions: 57629
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)