Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_D07
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 126 2e-29
Z74029-1|CAA98431.1| 293|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical pr... 31 1.1
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 31 1.1
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 29 4.5
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 29 4.5
Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical p... 29 6.0
L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protei... 29 6.0
L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeo... 29 6.0
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 126 bits (305), Expect = 2e-29
Identities = 58/136 (42%), Positives = 91/136 (66%)
Frame = +2
Query: 194 SVAEYYAGKSIFITGATGFMGKVLVEKLLKSCPGLNKLYLLMRPKKGQSSKERLDDFLGF 373
SV + YAG S+ +TG TGF+GKV+VEKLL + + +YL++R +KG++ +ERL L
Sbjct: 4 SVRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHD 63
Query: 374 KLFGPLQKENPKCFEKLHVVPGDILMDDLGISIADRELIQRECQVIFHCAACVRFDMFLR 553
LF +++E P+ F+KL + GD+++++LG+ D LI+ V+ H AA V+FD LR
Sbjct: 64 PLFNRIRQEKPEAFDKLKAIGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEHLR 123
Query: 554 DAVNLNTAATKRVLEL 601
AV +N TKR+++L
Sbjct: 124 AAVTMNVIGTKRIIDL 139
>Z74029-1|CAA98431.1| 293|Caenorhabditis elegans Hypothetical
protein C45B11.3 protein.
Length = 293
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 206 YYAGKSIFITGATGFMGKVLVEKLLK 283
++AGK++FITGA+ +GK + KL K
Sbjct: 10 FFAGKTVFITGASRGIGKEIALKLAK 35
>Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical
protein T26H5.3 protein.
Length = 325
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 229 ENRFARVVFGYASRWRHFQLFFLKFFLI 146
ENRF ++FG S+WRHF+ + + F I
Sbjct: 113 ENRF-HILFGQNSKWRHFRKYAIVFSYI 139
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 230 ITGATGFMGKVLVEKLLKSCPGLNKLYLLMRP-KKGQSSKERLDDFLGFKLFGPLQKENP 406
ITG T +GK +E+L K+ GL K YL+ R K ++K+ L + G ++ +
Sbjct: 508 ITGGTDGIGKAYIEELCKT-RGLKKFYLIGRNIDKLNNTKKELVEQHGCEVMCHVHD--- 563
Query: 407 KCFEK--LHVVPGDILMDDLGISI 472
FEK L +P D+ D+GI I
Sbjct: 564 --FEKDDLSALPKDLETLDVGILI 585
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 185 PSASVAEYYAGKSIFITGATGFMGKVLVEKLL 280
PS K I ITG GF+G LV+KL+
Sbjct: 126 PSVRYRNEETRKRILITGGAGFVGSHLVDKLM 157
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 185 PSASVAEYYAGKSIFITGATGFMGKVLVEKLL 280
PS K I ITG GF+G LV+KL+
Sbjct: 126 PSVRYRNEETRKRILITGGAGFVGSHLVDKLM 157
>Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 212 AGKSIFITGATGFMGKVLVEKLLKSCPGLNKL 307
A K+IFITGA +G LV +LLK PG+ L
Sbjct: 2 APKTIFITGANRGIGLGLVRELLK-VPGVEAL 32
>Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 212 AGKSIFITGATGFMGKVLVEKLLKSCPGLNKL 307
A K+IFITGA +G LV +LLK PG+ L
Sbjct: 2 APKTIFITGANRGIGLGLVRELLK-VPGVEAL 32
>L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protein
protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 384 PNNLNPRKSSNLSLLLCPFLGLINR*SLFKPGHDFNSFSTNTFPMKPVAP 235
P + P S+ + PF I R +LF P NS T P +P P
Sbjct: 35 PTSCIPSTSTGMLSPNLPFSATIPRVNLFPPSQPANSLILPTIPAQPFIP 84
>L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeobox
protein 23 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 384 PNNLNPRKSSNLSLLLCPFLGLINR*SLFKPGHDFNSFSTNTFPMKPVAP 235
P + P S+ + PF I R +LF P NS T P +P P
Sbjct: 37 PTSCIPSTSTGMLSPNLPFSATIPRVNLFPPSQPANSLILPTIPAQPFIP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,769
Number of Sequences: 27780
Number of extensions: 326297
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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