Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D05
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    31   0.29 
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    30   0.38 
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   2.7  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    26   8.3  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 520 RIEMAHALCLTERQIKIWFQNRRMKLK 600
           R ++   L + ER + IWFQNRR K K
Sbjct: 196 REKIGRELNIPERSVTIWFQNRRAKSK 222


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 505 LTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 603
           L  R+ +       +T R+++IWFQN+R  L++
Sbjct: 60  LIERQELSKKLKSSMTPRELQIWFQNKRQSLRR 92


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 253 LLGHSSKNFVFFFVPTMQQYKLSL 182
           +LGH SK  + FF+P +  + LS+
Sbjct: 301 ILGHFSKTLMLFFIPQIFNFALSV 324


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +1

Query: 484 EFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 615
           E  T H   RR+  +  H LC+ E +   +   + + + K +++
Sbjct: 136 EKQTKHVYIRRKIYDSQHQLCIEEDRTLAYLNRQELAIPKTLRS 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,580
Number of Sequences: 5004
Number of extensions: 41857
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)