Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D05
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...   107   1e-25
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    91   2e-20
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    91   2e-20
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    91   2e-20
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    58   8e-11
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    56   3e-10
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    53   3e-09
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    53   4e-09
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        46   5e-07
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.6  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score =  107 bits (257), Expect = 1e-25
 Identities = 47/53 (88%), Positives = 52/53 (98%)
 Frame = +1

Query: 472 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELN 630
           ELEKEFH NHYLTRRRRIE+AHALCLTERQIKIWFQNRRMKLKKE++A+KE+N
Sbjct: 22  ELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEIN 74


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 90.6 bits (215), Expect = 2e-20
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +1

Query: 472 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 606
           ELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 22  ELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 90.6 bits (215), Expect = 2e-20
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +1

Query: 472 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 606
           ELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 22  ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 66


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 90.6 bits (215), Expect = 2e-20
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +1

Query: 472 ELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 606
           ELEKEFH N YLTRRRRIE+AHALCLTERQIKIWFQNRRMK KKE
Sbjct: 284 ELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 328


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 58.4 bits (135), Expect = 8e-11
 Identities = 26/43 (60%), Positives = 33/43 (76%)
 Frame = +1

Query: 475 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 603
           L++EF  N YLT RRR +++  L LTE QIKIWFQN+R K+KK
Sbjct: 35  LKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +1

Query: 475 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 603
           L++EF  N YLT RRR +++  L L E QIKIWFQN+R K+KK
Sbjct: 35  LKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 53.2 bits (122), Expect = 3e-09
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +1

Query: 475 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 606
           LE +F T  YL+   R+ +A +L LTE Q+KIWFQNRR K KK+
Sbjct: 23  LENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 66


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 24/43 (55%), Positives = 29/43 (67%)
 Frame = +1

Query: 475 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 603
           LEK+F    YLT   R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 24  LEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 46.0 bits (104), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +1

Query: 502 YLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 615
           YL    R E+A +L LT+ Q+KIWFQNRR K KK ++A
Sbjct: 5   YLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKA 42


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 267 LFFCASQENNDQRLKYFLVSEYPCRSVTVLSSKMRPAS 380
           +FF  + ++N  RL   + SEY    V  L +  RP S
Sbjct: 86  IFFAQTWKDNRLRLPENMTSEYRLLEVDWLKNMWRPDS 123


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 268 NNGDFLLGHSSKNFVFFFV 212
           NNGD+++   ++   FF +
Sbjct: 242 NNGDYIIRQGARGDTFFII 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,363
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)