Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D04
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    60   4e-10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   6.3  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/52 (53%), Positives = 38/52 (73%)
 Frame = +1

Query: 322 ERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWE 477
           +R +RI RA+QLS++  ILPK EWTK EED  YL P++ +V  ER ERE ++
Sbjct: 65  DRVYRIRRAMQLSIENKILPKSEWTKPEEDYHYLRPVLAEVIAERKEREAFD 116



 Score = 33.5 bits (73), Expect = 0.041
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 216 NLSGFNKYGLLRDD-CLHETPDVTEALRRLP 305
           +LSG+ KYGL  DD  L E  D  +AL RLP
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLP 59


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 421
           STP TS P   T  T+   VPY S+P    +Y   S   +   P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT 528



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 421
           STP TS P   T  T+   VPY S+P    +Y   S   +   P T
Sbjct: 542 STPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT 587



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 421
           STP TS P   T  T+   VPY S+P         +      IPYT
Sbjct: 437 STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 421
           STP TS P   T  T+   +PY S+P         +      +PYT
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYT 505


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +1

Query: 334 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 474
           R+ + +  S ++  +  ++ + YE D   LT  + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,127
Number of Sequences: 5004
Number of extensions: 36881
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)