Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D04
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    39   0.006
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120     29   6.6  

>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 20/52 (38%), Positives = 33/52 (63%)
 Frame = +1

Query: 316 VDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 471
           VD R+ R+ RA+ LSM+   L + +  +      YL+ +++ V+KERLERE+
Sbjct: 63  VDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLEREE 114


>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
          Length = 361

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 316 VDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 480
           +D  +F +V    L+ +K  L KEEW + + +         + +KE  ERE+ EK
Sbjct: 216 IDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEK 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,277
Number of Sequences: 37544
Number of extensions: 250955
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)