Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D04
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical ...    49   4e-06
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    30   1.9  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   3.4  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   3.4  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   5.9  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    29   5.9  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    29   5.9  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    29   5.9  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical
           protein T02H6.11 protein.
          Length = 130

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = +1

Query: 307 PMXVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 471
           P   D+R  R+ RA  L++    LPK EWT+++++S YL P ++++E E+  R +
Sbjct: 63  PHVFDQRKIRLSRAHTLALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKKARAE 117



 Score = 36.3 bits (80), Expect = 0.029
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = +3

Query: 189 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHXC*REKLPYCTCHT 353
           + +L K+A+ NL G  +YGL   D   E  P+VTEALRRL     H   + K+     HT
Sbjct: 19  ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78

Query: 354 -ALHAKNNP 377
            ALH +  P
Sbjct: 79  LALHGEKLP 87


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 352 QLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 483
           +L MQ+  L   ++   E+D LYL     Q+EK+R +R+QW +E
Sbjct: 360 KLRMQRKTLEANDYYD-EDDDLYLDR-TGQLEKQREKRKQWAEE 401


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 190 VTASANGPTIFRDSINMVCYGMIACM-KLLM*LKHSADFHPMXVDERNFRIVRAIQLSMQ 366
           VTA+ NG     D + MV   +I  + +L+   +         V E+ F  +  ++    
Sbjct: 460 VTAARNGDVCVLDGVEMVHSSVIMSLSQLIYHRRFDLPNGNRLVGEKEFLTI--MERDGY 517

Query: 367 KTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 480
                ++ W K +  S  L  +++Q+E ++ ERE W K
Sbjct: 518 DADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 554


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 355 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 483
           LS+ K +L K++  + E++ L         Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 355 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 483
           LS+ K +L K++  + E++ L         Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 404 SYFVHSSLGRIVFCMESCMARTIRKFLSSTXMGWKSAECFSY--IRSFMQAIIP*QTIFI 231
           +Y++   +    F M   + R+I K  +S  + +K +ECFSY  I  F++ ++      +
Sbjct: 74  NYYIFHDI-YFAFTMNWSLYRSIEKSNNSCGIMFKGSECFSYYVIGIFVRVLLLTSQFAV 132

Query: 230 ESRKIVGPFAEAVTSVNS 177
              K++  F      +NS
Sbjct: 133 TIEKLIVTFLPNSDLINS 150


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 394 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 483
           T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 394  TKYEEDSLYLTPIVEQVEKERLEREQWEKE 483
            T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 915  TEREKEEEELKKLKEKQEKRKLEREQEEKE 944


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 394 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 483
           T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 340  VRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 480
            +R I +S       ++ W K +  S  L  +++Q+E ++ ERE W K
Sbjct: 1526 LREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,443
Number of Sequences: 27780
Number of extensions: 227841
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)