Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_D03
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 90 5e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 3e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 1e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 49 8e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 48 1e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 46 1e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 1e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 2e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 41 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 6e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 39 8e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 8e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.002
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 38 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.008
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 35 0.018
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 33 0.055
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.055
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.055
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.073
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 33 0.073
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.39
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.68
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 28 2.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.7
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb... 27 2.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 6.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 89.8 bits (213), Expect = 5e-19
Identities = 40/84 (47%), Positives = 54/84 (64%)
Frame = +2
Query: 311 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 490
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 491 NFPDYVQQGVKTMGYKEPTPIQAQ 562
FP+YV + VK +G++ PTPIQ Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQ 151
Score = 78.6 bits (185), Expect = 1e-15
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +3
Query: 549 PFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPDCFGLGAYQR 728
P + + WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGP L +
Sbjct: 147 PIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRE 206
Query: 729 VSTTNSASCCRF 764
++ C +F
Sbjct: 207 LAVQIQQECTKF 218
Score = 77.4 bits (182), Expect = 3e-15
Identities = 37/58 (63%), Positives = 42/58 (72%)
Frame = +1
Query: 697 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
PI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RD GV+I IATP
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATP 253
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 3e-09
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 698
P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 450 PAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Score = 52.4 bits (120), Expect = 8e-08
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 697 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
PIA+++ PTRELA QI + F +R C +GGAP + Q D + G +I + TP
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTP 549
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 326 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 502
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 503 YVQQGVKTMGYKEPTPIQAQGL 568
+ ++GY++PT IQAQ +
Sbjct: 428 QTISVINSLGYEKPTSIQAQAI 449
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +1
Query: 697 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
P L+LAPTREL QI + + F + S+VR V+GGA R Q R + G + ATP
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATP 313
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 549 PFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 653
P + PI SG++L+ AQTGSGKT ++ P +
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Score = 32.3 bits (70), Expect = 0.096
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 437 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGL 568
V VSG ++ P+ F ++ Q +K GY +PTP+Q +
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSI 200
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 49.2 bits (112), Expect = 8e-07
Identities = 18/43 (41%), Positives = 32/43 (74%)
Frame = +3
Query: 537 KNRRPFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHIN 665
K P + WP ++G+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLN 228
Score = 40.7 bits (91), Expect = 3e-04
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 670 NRLFGEVMVPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGV 849
N L VP LV++PTRELA Q + + ++ V+GGAPK QAR +
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NA 286
Query: 850 KIXIATP 870
+ I TP
Sbjct: 287 SVIIGTP 293
Score = 32.3 bits (70), Expect = 0.096
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 413 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 559
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQA 193
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.4 bits (110), Expect = 1e-06
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 680
P+ + K+L+G+A+TGSGKT A+I+P I+ I+ PP+
Sbjct: 281 PVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPL 317
Score = 44.8 bits (101), Expect = 2e-05
Identities = 26/58 (44%), Positives = 29/58 (50%)
Frame = +1
Query: 697 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
P A+VLAPTRELAQQIQ F R V GG Q+ G I +ATP
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATP 383
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +2
Query: 422 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 556
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
AL+LAPTRELAQQIQ+V G V GG R + GV + + TP
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTP 145
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 1e-05
Identities = 17/40 (42%), Positives = 30/40 (75%)
Frame = +3
Query: 549 PFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 668
P + K P+ + G+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 94 PIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKS 133
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
AL+L+P RELA Q +V DF + +R+ + GG Q I +ATP
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATP 197
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 537 KNRRPFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 674
K P + + P+ ++ ++++G+AQTGSGKT A+ LP I + N P
Sbjct: 67 KTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP 112
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
A+VLAPTRELA QI + G + VR+ + GG QA + + TP
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTP 172
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 479 FEEANFPDYVQQGVKTMGYKEPTPIQAQGL 568
F+E D + + + +G+K PTPIQ + +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 680
P+A+ GK+LV A+TGSGKT AY++P + + Q I
Sbjct: 46 PLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQI 82
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQV 753
AL+L PTRELAQQ+ V
Sbjct: 91 ALLLVPTRELAQQVYNV 107
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 674
P+A+ GK++VG A TGSGKT A+I+P + + +P
Sbjct: 291 PLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRP 325
Score = 34.3 bits (75), Expect = 0.024
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 706 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
L+L PTRELA Q VA + + GG + Q ++ I IATP
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATP 388
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 662
P A+ G++++G A+TGSGKTLA+I+P I ++
Sbjct: 71 PSALKGRDILGAAKTGSGKTLAFIVPLIENL 101
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
ALV++PTRELA Q + G + GG + + ++ + I + TP
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYK-EEKERLSRMNILVCTP 168
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
A+++APTREL QQI VA + + ++ + V GG K+ + GV I I TP
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTP 277
Score = 33.1 bits (72), Expect = 0.055
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 606 AQTGSGKTLAYILPAIVHINNQP 674
AQTGSGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.1 bits (87), Expect = 8e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 706 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
++++PTRELA QI VA + + V GGA +R +A GV + +ATP
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAI 653
P ++G++++G A+TGSGKTLA+++P I
Sbjct: 121 PPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 537 KNRRPFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 695
K P + P+ + K+LV A TGSGKTLAY+LP + + G G
Sbjct: 22 KKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG 74
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 479 FEEANFPDYVQQGVKTMGYKEPTPIQAQGL 568
F+ N +++ V G+K+ TP+QA +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAI 32
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAAD 762
AL++APTRELA QI V +
Sbjct: 75 ALIVAPTRELATQIFNVTKE 94
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/41 (31%), Positives = 30/41 (73%)
Frame = +3
Query: 549 PFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 671
P + + PIA+SG++++ A+ G+GKT A+++P++ ++ +
Sbjct: 69 PIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 706 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
L+L PTRELA Q QV G V+ GG R V I + TP
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTP 170
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
AL+L PTRELA QI + A G +++ + GG Q+ D + +ATP
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATP 133
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 579 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 674
+ G+N +G A+TGSGKT A+ LP I + P
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
AL+L+PTRELA QIQ V G V+ GG + + G + TP
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTP 147
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 413 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGL 568
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ +
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAI 52
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAIVH 659
P A G +++G A TGSGKTLA+ +P + H
Sbjct: 154 PEASIGFDIIGKADTGSGKTLAFGIPILEH 183
Score = 33.5 bits (73), Expect = 0.042
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
ALV+APTRELA QI Q + +R + GG + Q R + +ATP
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 33.1 bits (72), Expect = 0.055
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +1
Query: 670 NRLFGEVMVPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGV 849
+R+ V P A+ LAP+RELA+QI V + G Y FG K + +
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMG--KYTEVKTAFG--IKDSVPKGAKIDA 231
Query: 850 KIXIATP 870
+I I TP
Sbjct: 232 QIVIGTP 238
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 537 KNRRPFKL--KGWPIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQPP 677
K ++P K+ K P+ +S +N++G +Q+G+GKT A+ L + ++ P
Sbjct: 133 KFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP 183
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.1 bits (72), Expect = 0.055
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 591 NLVGVAQTGSGKTLAYILPAIVHINNQPP 677
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.1 bits (72), Expect = 0.055
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 591 NLVGVAQTGSGKTLAYILPAIVHINNQPP 677
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.7 bits (71), Expect = 0.073
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 703 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXG-VKIXIATP 870
+++L+PTRELA QI + A + + +R + GG K + G + IATP
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP 171
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 588 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 677
+N V A+TG+GKTLA++L A + P
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKP 106
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 32.7 bits (71), Expect = 0.073
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 501 IMCNKV*RQWVTKNRRPFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 677
I+C + +Q +T+ + P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTT-IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 579 MSGKNLVGVAQTGSGKTLAYILPAIV 656
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.68
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 570 PIAMSGKNLVGVAQTGSGKTLAYILPAI 653
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 682 GEVMVPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKRXQA---RDXEXGV 849
GEV V LVL TRELA QI+ A F + VR +GG + +D
Sbjct: 118 GEVSV---LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSP 174
Query: 850 KIXIATP 870
I +ATP
Sbjct: 175 HIVVATP 181
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 501 IMCNKV*RQWVTKNRRPFKLKGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 668
I+C K + T NR + +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 266 ILCRKTFLSYQTLNR--IQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 664 ITNRLFGEVMVPIALVLAPTRELAQQIQQVAADF 765
I N + G+V+ PI + P R+ Q++ + DF
Sbjct: 147 IVNNVVGDVVYPIFITCDPARDPPQEMAEYLEDF 180
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 541 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 416
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 401 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 532
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 584 RHSYRPALELEWASVLCNPLSLHLVAHNQENLLLQ 480
R YR + +WASV N LH +N L+Q
Sbjct: 26 RVPYRNKKQKKWASVHNNEAQLHSANKRNDNCLIQ 60
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 401 PYEVEEYRNKHEVTVS 448
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 376 WIIKVFVERLE*NRIPIWASHVLPSREF 293
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,294
Number of Sequences: 5004
Number of extensions: 69263
Number of successful extensions: 245
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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