Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D03
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       44   2e-06

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +2

Query: 434 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGL 568
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q   L
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227



 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 537 KNRRPFKLKGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 653
           K   P +    PI M+G++L+  AQTGSGKT A+ +P I
Sbjct: 217 KKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPII 255



 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 697 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRXQARDXEXGVKIXIATP 870
           P  ++++PTREL  QI Q    F   S ++    +GG     Q      G  I +ATP
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATP 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,517
Number of Sequences: 438
Number of extensions: 4717
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)