Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D01
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 705 GGPPPPXXXKXXXXPXXXXXPPPP 776
           G PPPP        P     PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +2

Query: 662  PPPXKKKKKXXPXXXXPPPPXXXKXXXXPXXXPXXPPPXXXP 787
            PPP        P    PPPP   +    P       PP   P
Sbjct: 910  PPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQP 951


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 705 GGPPPPXXXKXXXXPXXXXXPPPP 776
           GGPPPP              PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.149    0.541 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,623
Number of Sequences: 5004
Number of extensions: 14811
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)