Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C19
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.69 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -2

Query: 819 PXPXXXXPPXXXXXXPPPPXXXXXXXPXXPPXPXXXPP 706
           P P    PP      PPPP          PP P   PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
 Frame = -3

Query: 818 PPXXXXXXPXXXXXXPPPXXXXXXXPPPXPPXP-----XPPXPXXP 696
           PP      P       PP       PPP PP P      PP P  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 813  PXXXXPPXXXXXXPPPPXXXXXXXPXXPPXPXXXPPXLP 697
            P    PP      PPPP       P  PP P   PP  P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAP 1731



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -3

Query: 794  PXXXXXXPPPXXXXXXXPPPXPPXPXPPXPXXP 696
            P      PPP       PP  PP P  P    P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 773 PPPXXXXXXXPPPXPPXPXPP 711
           PPP       PP  PP P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 798 PPXXXXXXPPPPXXXXXXXPXXPPXP 721
           PP      PPPP       P  PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -2

Query: 819 PXPXXXXPPXXXXXXPPPPXXXXXXXPXXPPXP 721
           P P    P       PPPP       P  PP P
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,032
Number of Sequences: 5004
Number of extensions: 8346
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)