Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C18
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    31   1.8  
01_03_0108 - 12628711-12629178                                         29   7.2  
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948     28   9.5  

>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 235 LWRSEHFSLLGGKKGXFPHRTELKARIGEDSSRT 336
           LW  EHF L  G +   PHR    + IG DS+ T
Sbjct: 67  LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100


>01_03_0108 - 12628711-12629178
          Length = 155

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 397 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 266
           KHK+V ++++   K+    T     LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136


>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
          Length = 712

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 302 SSVRWGNXPFLPPSKEKCSDRHNRHRA 222
           S +RW    FLPPS +  SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,231
Number of Sequences: 37544
Number of extensions: 325141
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)