Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C17
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.16 
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.50 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    30   0.50 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.87 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   8.1  

>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 588 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 752
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  EM
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 147 FTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACIDYDGFL---NMKLEHSLNCNDEKF 317
           ++ V+L    KL  ++ FT  FV+ L A + +TAC    G+L     +   +   N++KF
Sbjct: 123 YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSRFHDNRRWNEQKF 182

Query: 318 CHRG-SITLKSIRTGVPIIDQI 380
                S   + +  G+ +   +
Sbjct: 183 MELAVSAVEEQLSNGIQLFSNV 204


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 525 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFYLRYIEQAP----VPD 692
           NG+  V+N W+L NG  I +   +A++   +K+ T   K   +     I+ A      P+
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVKEARRQVAECIQDAQHNRLKPE 711

Query: 693 TASYIQKMERDREAREKGEMKDNRSXLAKY 782
               +++    + +R   + +DN    A++
Sbjct: 712 PGMTLRESFEAKVSRILNQARDNAGRSAEH 741


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +3

Query: 615 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 749
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 763 LLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 662
           L+SF +PF +AS+      ++ + + TGA  I+L
Sbjct: 421 LISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,088
Number of Sequences: 5004
Number of extensions: 53070
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)