Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C17
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 63 2e-10
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530... 33 0.23
06_03_0754 + 24190778-24191284,24191735-24191784,24192311-241923... 33 0.30
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 31 0.92
07_03_0708 - 20865786-20867153 29 3.7
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 4.9
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 63.3 bits (147), Expect = 2e-10
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 9/202 (4%)
Frame = +3
Query: 240 STACIDYDGFLNMKLEHSLNCNDEKFCHRGSIT--LKSIRTGVPIIDQILFNEKHL---- 401
S+A + LEH L F GS + LKS G + ++ F L
Sbjct: 70 SSAAAAESSAVQFSLEHDLGAG---FVPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDE 126
Query: 402 -EALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVI 578
+A KKL +ED FYSI+ + ++ +SS+KA+ L + I + ++
Sbjct: 127 KDAFKKLLDEDGFYSIRLLSNVLDPARKDYVVSSIKARCIPRESLDEHIVIH-MDGVNIL 185
Query: 579 AVNF-QVANSTQPLK-QATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 752
AVN+ V T P + +++ NS L+ EQAP T S++ ++ +
Sbjct: 186 AVNYGSVGGCTYPRPVKMPSKWVFNSYTVLKTSEQAP--RTPSFVDQLIEAENGLGEVVK 243
Query: 753 KDNRSXLAKYWMYIVPVXIFXM 818
+S AKYWMYI+P+ + M
Sbjct: 244 SPEKSFWAKYWMYIIPLGLIVM 265
>02_01_0708 -
5298456-5298664,5299615-5299768,5300209-5300301,
5300644-5300847,5302034-5302174,5302723-5302827,
5303485-5303874,5304573-5304713,5304756-5304845,
5305779-5306288
Length = 678
Score = 33.5 bits (73), Expect = 0.23
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 29 GHSLRXLDRHQLIQLIIVPFKFEIIYGC 112
GHS++ L+ H+ + I+ P K+ +YGC
Sbjct: 373 GHSVKVLNCHESVIYILAPLKYATVYGC 400
>06_03_0754 +
24190778-24191284,24191735-24191784,24192311-24192383,
24192577-24192717,24193635-24194039,24194215-24194319,
24194635-24194775,24195330-24195533,24196206-24196292,
24196689-24196800,24197972-24198015
Length = 622
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 23 LXGHSLRXLDRHQLIQLIIVPFKFEIIYGC 112
+ GHS++ L+ H + I+ P K+ +YGC
Sbjct: 386 IKGHSIKVLNCHDSVIYILAPVKYATVYGC 415
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 31.5 bits (68), Expect = 0.92
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 144 KFTNVVLIYLNKLIIMQQFTLIF--VVHLTALFASTACIDYDGFLNMKLEHSL 296
KFT VV+++ K +IM + ++ V HL + S++ + Y+ ++ H L
Sbjct: 627 KFTAVVIVFKKKSVIMILYNMLSQNVFHLVEMVVSSSWLGYEALSQVEYTHML 679
>07_03_0708 - 20865786-20867153
Length = 455
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 393 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 530
KH EA+++ + F S T G+ + SSV QA LENG
Sbjct: 42 KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87
>06_03_0650 + 23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/112 (20%), Positives = 43/112 (38%)
Frame = +3
Query: 324 RGSITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSV 503
R ++ L +I +P++ I + ED SI + + + + T+Y V
Sbjct: 672 RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 731
Query: 504 KAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFY 659
AQA + + D+ W P + + ++AT + L FY
Sbjct: 732 CAQAHRQELIQDLYKTWHDPQRGTV-TGGMIRELLISFRKATGQKPLRIIFY 782
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,781
Number of Sequences: 37544
Number of extensions: 273360
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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