Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C17
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical ...    73   4e-13
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    31   0.82 
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical
           protein Y43F8C.7 protein.
          Length = 236

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 30/48 (62%), Positives = 39/48 (81%)
 Frame = +3

Query: 681 PVPDTASYIQKMERDREAREKGEMKDNRSXLAKYWMYIVPVXIFXMIS 824
           P PDTA+++QKMER++ A++ G   DNRS LAKYWMYIVPV +F +IS
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHGADADNRSFLAKYWMYIVPVVLFAVIS 222


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
 Frame = -3

Query: 208 IKVNCCIIIN--LFKYINTTLVNLITS 134
           IK NC +IIN  LFKYI+T+++ L+T+
Sbjct: 88  IKSNCDLIINKTLFKYIHTSVIFLLTT 114


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 759 YPSFLPFHVPLCHVPFFVYMTQYRELELAQYILS 658
           Y   + + + L H P +VY+  Y E +LA Y+L+
Sbjct: 314 YTGDISYSLYLVHWPIYVYVKHYYENQLAAYLLA 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,316
Number of Sequences: 27780
Number of extensions: 284926
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)