Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C15
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    42   2e-04
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   3.7  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   3.7  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   4.9  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 529 KPYGCELCGAKYKTRAGLTYHFTHTH 606
           KPY CE+C  +YK   GL YH TH+H
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSH 422



 Score = 32.3 bits (70), Expect = 0.099
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 526 EKPYGCEL--CGAKYKTRAGLTYHFTHTHKDP 615
           +KPY C +  C   YK + GL YH  H H  P
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSP 378


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 362 AQTSWWSYAYWT 397
           AQ SWW + YWT
Sbjct: 199 AQLSWWPWTYWT 210


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 54  GQVYTYPAQRWRKARRQYLTMSSTRW 131
           GQ++TY A  WR +    L   S  W
Sbjct: 552 GQLFTYVASNWRSSTNLILNWLSEEW 577


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 714 PXRSPALSTRNSXRDVPEXSLPPGACWLYPSPARAVVRXPXFLXP 848
           P   P+L T +S  ++   ++P G   LYP     +V+ P FL P
Sbjct: 168 PIPDPSLVTPSSDVNLSRITIPYG---LYPDAGPPLVQAPKFLAP 209


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 520 DAEKPYGCELCGAKYKTRAGLTYHF-THTHKDP 615
           DA +PY C LC   +      T H  THT + P
Sbjct: 21  DAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKP 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,665
Number of Sequences: 5004
Number of extensions: 41920
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)