Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C15
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0857 + 28794127-28794786 31 1.3
12_02_1153 + 26524232-26524474,26524563-26524694 29 3.9
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 3.9
12_01_0262 - 1921625-1921792,1922023-1922163,1922942-1923344,192... 29 5.2
11_01_0264 - 2002884-2003051,2003313-2003453,2004211-2004613,200... 29 5.2
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 29 5.2
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 29 5.2
05_05_0007 - 21465506-21466273 29 6.8
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375... 28 9.0
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 28 9.0
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 28 9.0
>04_04_0857 + 28794127-28794786
Length = 219
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 168 GDGENSSGLPDALGGDDSRDGSQTAAKDDPK 260
G G +SSG P +GGD D T + PK
Sbjct: 7 GSGYSSSGTPSPVGGDGDEDSYMTVSSAPPK 37
>12_02_1153 + 26524232-26524474,26524563-26524694
Length = 124
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 126 RWGWNRAADLADNTGDGENSSGLPDALGGDDSRDGSQTAAKDD 254
RW R A A +G G + D GGDD DG DD
Sbjct: 39 RWERRRLAWAAGASGSGGSRDDDNDVSGGDDDDDGGGGDCNDD 81
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +3
Query: 153 LADNTGDGENSSGLPDALGGDDS---RDGSQTAAKD 251
+ DNT D NSSGL + G DD+ RD Q A K+
Sbjct: 1421 VVDNTEDEANSSGLDEEKGDDDAENLRDLLQKARKE 1456
>12_01_0262 -
1921625-1921792,1922023-1922163,1922942-1923344,
1923510-1923692,1923806-1924056,1925069-1925674
Length = 583
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 306 HQFPFPPLPVHHKTIPLDHLLLQSVIHLYCHLHLVHQV 193
+ FP PP +H K +P + L +H + H+V
Sbjct: 61 YSFPLPPDALHKKAVPFKYAPLPDDLHAVSNWSATHEV 98
>11_01_0264 -
2002884-2003051,2003313-2003453,2004211-2004613,
2004778-2004960,2005074-2005324,2006323-2006928
Length = 583
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 306 HQFPFPPLPVHHKTIPLDHLLLQSVIHLYCHLHLVHQV 193
+ FP PP +H K +P + L +H + H+V
Sbjct: 61 YSFPLPPDALHKKAVPFKYAPLPDDLHAVSNWSATHEV 98
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 564 VLSTAQFAAVGLLRVARHLVRQRA-LTRTPPSSTCSAP 454
+LS AA+ LL ++ +L R+RA + PPS+T +AP
Sbjct: 13 LLSAIFGAAIALLFLSGYLRRKRAAIAHLPPSATAAAP 50
>01_01_0962 +
7570490-7570796,7571984-7572540,7572702-7572749,
7572841-7573789,7574573-7575528
Length = 938
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -2
Query: 591 VVREAGASFVLSTAQFAAVGLLRVARHLVRQRALTRTPPSSTCSAPFSRCIIRLRFPCSP 412
++ ++G+S L +AV +AR AL + + T A F I+R RFPCS
Sbjct: 810 LIEDSGSSKDLKNLFTSAVDQPFLARS--SNLALMQNSGTVTIKASFKEDIVRFRFPCSG 867
Query: 411 S 409
S
Sbjct: 868 S 868
>05_05_0007 - 21465506-21466273
Length = 255
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +3
Query: 723 SPALSTRNSXRDVPEXSLPPGA----CWLYPS 806
S L T NS RD+P S PP A W++PS
Sbjct: 8 SSVLYTINSARDIPPSSPPPPAATPPAWMWPS 39
>09_03_0097 +
12335425-12336197,12336438-12336618,12337409-12337572,
12338132-12338393,12338488-12338604
Length = 498
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 30 EFLKI*KEGQVYTYPAQRWRKARRQYLTMSSTRWGWNRAADLADNTGDGENSSGLPDALG 209
EFL+ G+ A RW + R T S GW R D+A + N +P A G
Sbjct: 39 EFLRRLDIGEEREQEAARWWRRREDAATTSGAA-GWWRREDVATTSAAAANRRVVP-AFG 96
Query: 210 G 212
G
Sbjct: 97 G 97
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 378 HHDVCAYLRMYHHNNLHLTQLQALHQFPFPP 286
HH L HHN HL HQ PP
Sbjct: 8 HHHQLPSLLQQHHNGHHLLDQHQQHQHQLPP 38
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 144 AADLADNTG--DGENSSGLPDALGGDDSRDGSQTAAKDDPKEWFYD 275
AA +A TG GE LP+A+ GD G T A D P +D
Sbjct: 4 AAGVAAGTGRGSGEGEELLPNAVEGDGGCGGGGTCAGDRPWRLNFD 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,547
Number of Sequences: 37544
Number of extensions: 341555
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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