Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C14
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...   161   9e-41
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   2.0  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   2.6  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   7.9  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   7.9  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score =  161 bits (392), Expect = 9e-41
 Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
 Frame = +2

Query: 272 RQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILF 451
           +Q+VLV + RG+ +R RHL+ D+  +MPH K +SK++    LY +NE++E+ NCN    F
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101

Query: 452 EGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHY 631
           E R+  DLY+ I+  PNGP+ KF VEN++TM EL MTGN L+GSRP+LSFD  F   PH 
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161

Query: 632 CLLKELLVQIFGVP-NYHSKKSTIFRSC 712
            ++KELL Q FG+P      K  I R C
Sbjct: 162 KVVKELLQQTFGIPKGARRSKPFIDRVC 189



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 687 KSQPFFDHVYTFMVLDXRIWXRNYQ 761
           +S+PF D V T  + D +IW RNY+
Sbjct: 180 RSKPFIDRVCTLTIADGKIWFRNYE 204


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +2

Query: 419 EMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIY-TMGELKMTGNCLRGSRPLL 595
           ++++  K +LFE       Y  +  I + P       N+Y    EL +  N  R ++   
Sbjct: 224 QIQSLMKSLLFEYHHENVNY--VPTIADAPLTDEQKLNLYLARNELIVLANHFRDTKE-- 279

Query: 596 SFDPQFTKDPHYC-LLKELLVQIFGVPNYHS---KKSTIFR 706
             DP    +P    L +  L+  FGVPNY S     +T+FR
Sbjct: 280 --DPAIVANPFPVRLARPALINAFGVPNYDSVVPMYTTVFR 318


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 443 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 565
           +L E RK  +  + + ++PNGPS  F + N+ T  E+   G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 QXRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKN 394
           +  M + P+P  +K  N++R L  ++   N R     +++KK+     ++S  +  KN
Sbjct: 563 EHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 560 TGNCLRGSRPLLSFDPQFTKDPHYCLLKE 646
           T +CL G    L      + DPH+CLL+E
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLRE 225


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 498 GILDIHIYKSLIFLPSNKIHLLQFFISLISLTTYKFLLL 382
           GIL   +YK  + L + ++ L  FF S++ + T+  +++
Sbjct: 134 GILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,824
Number of Sequences: 5004
Number of extensions: 74872
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)