Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C14
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054...   152   3e-37
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    35   0.096
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     32   0.51 
01_01_0433 + 3282195-3285185                                           28   8.3  

>02_04_0434 -
           22904790-22904927,22905220-22905318,22905404-22905472,
           22905582-22905683,22905750-22905824,22906293-22906417,
           22906511-22906589,22906933-22907074,22907200-22907441
          Length = 356

 Score =  152 bits (369), Expect = 3e-37
 Identities = 66/138 (47%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
 Frame = +2

Query: 269 NRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNL-YVVNEISEMKNCNKCI 445
           N+++VLV   R IN+R+RHLM+++  L+PH K +SK+E  ++    +NE+ E++NC+ C+
Sbjct: 66  NKEKVLVTCSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCL 125

Query: 446 LFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDP 625
            FE RK +DLY+W+   P GPS KFLV  ++TM ELK+TGN L+GSRPL++F   F + P
Sbjct: 126 FFECRKQKDLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLITFSTNFDEQP 185

Query: 626 HYCLLKELLVQIFGVPNY 679
           H+ L+KE+L Q+  V N+
Sbjct: 186 HWQLVKEMLTQLSHVMNF 203



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 687 KSQPFFDHVYTFMVLDXRIWXRNYQNSV 770
           K++PF DHV+ F ++D  +W RNYQ SV
Sbjct: 231 KAKPFHDHVFVFSIVDDHVWFRNYQISV 258


>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +2

Query: 404 VNEISEMKNCNKCILFE---GRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCL 574
           +N   +   CN C+ FE   G +M   +M+  N        FL+   +    +++     
Sbjct: 135 INVFLKWSRCNFCLFFEWAEGDQMMICHMF--NTLKEIHISFLINPAFLDESMEV----- 187

Query: 575 RGSRPLLSFDPQFTKDPHYCLLKELLVQIF 664
           + + PLLSF   F +D  + L+KE+L+ +F
Sbjct: 188 KVTNPLLSFSSNFVEDETWALVKEMLMMMF 217


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 293 AMRGINHRH-RHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFE---GR 460
           A R   H   R ++ED+K  + H K   +     NL +VNE+ E K   K +L E    R
Sbjct: 262 AWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNER 321

Query: 461 KMRDLYMWISN 493
           K R+L   + N
Sbjct: 322 KARELTEEVCN 332


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 491 NIPNGPSAKFLVENIYTMGELKMTGNCLRGSRP 589
           NI NG     L+EN  T+  L + GN LRG  P
Sbjct: 644 NILNGSIPSCLMENSSTLKILNLRGNELRGELP 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,235,823
Number of Sequences: 37544
Number of extensions: 421197
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)