Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C12
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...   178   1e-45
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   4.6  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   6.1  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score =  178 bits (433), Expect = 1e-45
 Identities = 94/182 (51%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
 Frame = +2

Query: 323 IGAIDDNKDWSANYCNMLGF-DDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDP 499
           +  I  +KD S N+ N+LGF ++ +F ELMRLYLTIH+DHEGGNVSAHT HLVGSALS P
Sbjct: 235 VAPIQMDKDHSYNFANVLGFANNEEFVELMRLYLTIHADHEGGNVSAHTGHLVGSALSSP 294

Query: 500 YLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGL 679
           +LS AA LNGLAGPLHGLANQEVL +L  ++K++GD+ +EE +K ++WK L SG+VVPG 
Sbjct: 295 FLSMAASLNGLAGPLHGLANQEVLNFLITMKKEIGDDLSEETIKSYLWKLLNSGRVVPGY 354

Query: 680 RSRST*KN*SKIYLPA*VCS*ALTQ*PIIQAGRCCYKVVPPILTELGKSK-PMA*CXLHS 856
                 K   +           L + P+ Q     Y++VP +LTE GK+K P      HS
Sbjct: 355 GHAVLRKTDPRYTAQREFALEHLPKDPMFQLVSRLYEIVPGVLTEHGKTKNPYPNVDSHS 414

Query: 857 XV 862
            V
Sbjct: 415 GV 416



 Score =  100 bits (240), Expect = 2e-22
 Identities = 46/81 (56%), Positives = 58/81 (71%)
 Frame = +1

Query: 73  RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTM 252
           R++LP  V  +++  P  LHPM+QFS AVTAL  +S FAKAY  G++K  YW+Y YED M
Sbjct: 153 RSQLPKFVEELIDRCPPTLHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYEDCM 212

Query: 253 NLIAKLPVIAATIYRNVYRDG 315
           +LIAK   IA  IYRN+YRDG
Sbjct: 213 DLIAKTVPIAGRIYRNLYRDG 233


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 384 SKPSMLQ*FADQSLLSSMAPMPLAIAVHVAID 289
           S+PSMLQ  A ++L+  MA  PLAI +   I+
Sbjct: 128 SQPSMLQVAAMKTLVCIMADRPLAIRLFEQIN 159


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 299 TCTAMARGIGAIDDNKDWSANYCNM 373
           T  A ARG G+  + KDWS  + N+
Sbjct: 33  TVFASARGPGSASELKDWSKTHSNV 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,568
Number of Sequences: 5004
Number of extensions: 64798
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)