Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C12
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 205 3e-53
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 169 2e-42
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212... 72 7e-13
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 43 3e-04
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 32 0.69
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 29 6.4
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 205 bits (501), Expect = 3e-53
Identities = 104/179 (58%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
Frame = +2
Query: 329 AIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLS 508
A D+ D++AN+ +MLGFDDP+ ELMRLY+TIH+DHEGGNVSAHT HLVGSALSDPYLS
Sbjct: 235 AADNALDYAANFSHMLGFDDPKMLELMRLYVTIHTDHEGGNVSAHTGHLVGSALSDPYLS 294
Query: 509 FAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGLRSR 688
FAA LNGLAGPLHGLANQEVL+W++ + + G + T +QLKE++WKTLKSG+VVPG
Sbjct: 295 FAAALNGLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKVVPGFGHG 354
Query: 689 ST*KN*SKIYLPA*VCS*ALTQ*PIIQAGRCCYKVVPPILTELGKSK-PMA*CXLHSXV 862
K + L + P+ Q Y+VVPPILTELGK K P HS V
Sbjct: 355 VLRKTDPRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGV 413
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +1
Query: 64 LPRRAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYE 243
L R+ +P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YE
Sbjct: 148 LVTRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMPKSKFWEPTYE 207
Query: 244 DTMNLIAKLPVIAATIYRNVYRDGK 318
D +NLIA+LP +A+ +YR +++DGK
Sbjct: 208 DCLNLIARLPPVASYVYRRIFKDGK 232
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 169 bits (412), Expect = 2e-42
Identities = 101/194 (52%), Positives = 125/194 (64%), Gaps = 16/194 (8%)
Frame = +2
Query: 329 AIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDHEGGNVSAHTTHL----------- 475
A D+ D++AN+ +MLGFDDP+ ELMRLY+TIH+DHEGGNVSAHT HL
Sbjct: 235 AADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLENPGVSVWPFN 294
Query: 476 ----VGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIW 643
VGSALSDPYLSFAA LNGLAGPLHGLANQEVL+W++ + + G + T +QLKE++W
Sbjct: 295 ALGKVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYVW 354
Query: 644 KTLKSGQVVPGLRSRST*KN*SKIYLPA*VCS*ALTQ*PIIQAGRCCYKVVPPILTELGK 823
KTLKSG++V T +++L AL + Y+VVPPILTELGK
Sbjct: 355 KTLKSGKIV----CHDTFIR--RLFL-------ALVMEFYVSK---LYEVVPPILTELGK 398
Query: 824 SK-PMA*CXLHSXV 862
K P HS V
Sbjct: 399 VKNPWPNVDAHSGV 412
Score = 96.3 bits (229), Expect = 3e-20
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +1
Query: 64 LPRRAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYE 243
L R+ +P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YE
Sbjct: 148 LASRSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYE 207
Query: 244 DTMNLIAKLPVIAATIYRNVYRDGK 318
D +NLIA+LP +A+ +YR +++ GK
Sbjct: 208 DCLNLIARLPAVASYVYRRIFKGGK 232
>11_06_0435 -
23519908-23520054,23520398-23520514,23521152-23521263,
23521491-23521540,23522001-23522129,23522289-23522375,
23523635-23523679,23523817-23523887,23523925-23524005,
23524547-23524602,23526489-23526595
Length = 333
Score = 71.7 bits (168), Expect = 7e-13
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +2
Query: 476 VGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKT 649
VGSAL PYLS A LNG AGPLHG++NQEVL+W++ + Q+G + + LKE + T
Sbjct: 121 VGSALGGPYLSLVAALNGFAGPLHGMSNQEVLLWIKPITGQIGSDIRTDLLKECVENT 178
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +2
Query: 386 DPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQE 565
+P+ ++ + +H++HE +A HL S + D + + + + L GPLHG AN+
Sbjct: 300 NPRLARVLDILFILHAEHEMNCSTAAARHLASSGV-DVFTALSGAVGALYGPLHGGANEA 358
Query: 566 VLVWLEKL 589
VL L ++
Sbjct: 359 VLKMLNEI 366
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 31.9 bits (69), Expect = 0.69
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 128 CIPCRSSRLPSPHSTVNLNSLKPTQRACTNPSI-GSTCT 241
C R+SR SPH+T L + + C NP G C+
Sbjct: 1660 CSQLRTSRFTSPHATDELKDTREAPKPCCNPQTEGGLCS 1698
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 145 TATWDAVCRAYCS-TLSLREP 86
+A W+A+C AYCS T R+P
Sbjct: 852 SAAWEAICEAYCSDTNPTRDP 872
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,929,598
Number of Sequences: 37544
Number of extensions: 473132
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -