Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C12
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 204 8e-53
Z92789-8|CAB07222.3| 495|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z68336-9|CAA92741.3| 495|Caenorhabditis elegans Hypothetical pr... 30 2.5
U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical pr... 30 2.5
AC006720-7|AAF60444.1| 511|Caenorhabditis elegans Cytochrome p4... 29 3.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 7.5
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 28 7.5
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 7.5
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 28 10.0
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 28 10.0
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 28 10.0
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 28 10.0
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 28 10.0
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 28 10.0
AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical... 28 10.0
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 204 bits (497), Expect = 8e-53
Identities = 104/181 (57%), Positives = 123/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 323 IGAIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPY 502
+ ID KDWSAN+ +MLG+DDP F ELMRLYL IHSDHEGGNVSAHT+HLVGSALSDPY
Sbjct: 229 VSVIDPKKDWSANFSSMLGYDDPLFAELMRLYLVIHSDHEGGNVSAHTSHLVGSALSDPY 288
Query: 503 LSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGLR 682
LSF+A + GLAGPLHGLANQEVLV+L K+ ++G N+TEEQLKE++WK LKSGQVVPG
Sbjct: 289 LSFSAAMAGLAGPLHGLANQEVLVFLNKIVGEIGFNYTEEQLKEWVWKHLKSGQVVPGYG 348
Query: 683 SRST*KN*SKIYLPA*VCS*ALTQ*PIIQAGRCCYKVVPPILTELGKSK-PMA*CXLHSX 859
K + L + + YK+ P IL E GK+K P HS
Sbjct: 349 HAVLRKTDPRYECQREFALKHLPNDDLFKLVSTLYKITPGILLEQGKAKNPWPNVDSHSG 408
Query: 860 V 862
V
Sbjct: 409 V 409
Score = 126 bits (305), Expect = 2e-29
Identities = 55/81 (67%), Positives = 67/81 (82%)
Frame = +1
Query: 73 RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTM 252
RA+LP HVV ML+N P LHPM+QF AA+ ALN+ESKFA AY+ GV K+ YWEY YED+M
Sbjct: 146 RADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNNESKFAGAYARGVAKASYWEYAYEDSM 205
Query: 253 NLIAKLPVIAATIYRNVYRDG 315
+L+AKLP +AA IYRN+YRDG
Sbjct: 206 DLLAKLPTVAAIIYRNLYRDG 226
>Z92789-8|CAB07222.3| 495|Caenorhabditis elegans Hypothetical
protein H02I12.8 protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 645 KHLNLVRLYLXYGHAVLRKTDPRYTCQREFALKHLPNDP 761
KHLN R Y GH ++ K DP + + +L DP
Sbjct: 31 KHLNQPRSYPIVGHGLITKPDPEGFMNQVIGMGYLYPDP 69
>Z68336-9|CAA92741.3| 495|Caenorhabditis elegans Hypothetical
protein H02I12.8 protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 645 KHLNLVRLYLXYGHAVLRKTDPRYTCQREFALKHLPNDP 761
KHLN R Y GH ++ K DP + + +L DP
Sbjct: 31 KHLNQPRSYPIVGHGLITKPDPEGFMNQVIGMGYLYPDP 69
>U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical
protein F35D11.8 protein.
Length = 237
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 115 MPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYE----DTMNLIAKLPVIA 282
+ G+L P +F+ + +F + EG+ KY ++Y+ DT + KL V A
Sbjct: 107 LDGQLSPRCKFAIYKGQVKGAKRFNQTSEEGICNIKYELFIYDDINTDTSFIRTKLGVSA 166
Query: 283 ATIYRNVYRD 312
+ R+V D
Sbjct: 167 GSNVRSVQAD 176
>AC006720-7|AAF60444.1| 511|Caenorhabditis elegans Cytochrome p450
family protein 31A3 protein.
Length = 511
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 645 KHLNLVRLYLXYGHAVLRKTDPRYTCQREFALKHLPNDP 761
KHLN R Y GH ++ K DP + + +L DP
Sbjct: 31 KHLNQPRSYPIVGHGLVTKPDPEGFMNQVIGMGYLYPDP 69
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 657 DLSVFQMNSLSCSSVKLSPTCLRSFSSHTRT 565
D+ QMN L C+ +SP+C +S++ RT
Sbjct: 1373 DVDRSQMNYLMCNMGTVSPSCHKSYAQAPRT 1403
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 158 SPHSTVNLNSLKPTQRACTNPSIGSTCTKTR*TLSRNCP*SPPLSIATCTAMARGIGAID 337
S +S V+ + R C + S CT ++ CP P+++ T T+ G +
Sbjct: 127 SGYSKVSNQAAWQRSRTCLSGSYNCPCTGDSVMITHTCP-CTPITVITSTSNTCAGGTLH 185
Query: 338 DN 343
DN
Sbjct: 186 DN 187
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 657 DLSVFQMNSLSCSSVKLSPTCLRSFSSHTRT 565
D+ QMN L C+ +SP+C +S++ RT
Sbjct: 1373 DVDRSQMNYLMCNMGTVSPSCHKSYAQAPRT 1403
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PGKLHPMSQFSAAVTALNS--ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLP-VIAAT 288
P P ++ SAA++ N+ +FA AY E + + K+ EY + + + + P V+
Sbjct: 69 PPSKPPSNRNSAALSRHNTVRSHQFAFAYDENIGRVKWEEYNRREGIEDVPEQPIVVRVP 128
Query: 289 IYRNVYR 309
I+R + +
Sbjct: 129 IWRRILK 135
>AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical
protein Y71F9B.9b protein.
Length = 281
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 449 NVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEK 586
N + T HL + D + +AAG+ GP+ +++V+ LE+
Sbjct: 202 NGTCETVHLNAFGVRDYFKRYAAGITADMGPIPDFTDEKVINKLEE 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,144
Number of Sequences: 27780
Number of extensions: 376647
Number of successful extensions: 1111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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