Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C11
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    97   3e-21
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    97   3e-21
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    29   1.3  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    28   2.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 45/79 (56%), Positives = 59/79 (74%)
 Frame = +2

Query: 182 GAHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 361
           GA  + + P+       EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 362 YQKYVDEASKKEIKDILVT 418
           YQK+VDE SK E+K  L+T
Sbjct: 90  YQKFVDEHSKAELKKALIT 108



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +3

Query: 402 KTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
           K + + YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 103 KKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +1

Query: 94  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKV 45


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 45/79 (56%), Positives = 59/79 (74%)
 Frame = +2

Query: 182 GAHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 361
           GA  + + P+       EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 362 YQKYVDEASKKEIKDILVT 418
           YQK+VDE SK E+K  L+T
Sbjct: 90  YQKFVDEHSKAELKKALIT 108



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +3

Query: 402 KTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
           K + + YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 103 KKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +1

Query: 94  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKV 45


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 115 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQXTYPFA 249
           G++K++ A      G G   VNG P D+   R++  K    YP A
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLA 55



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 275 DIRVTVKGGGHVAQVYAIRQAISKALI 355
           ++  TV GGG   Q  A+  AISK+LI
Sbjct: 64  NVWATVHGGGPTGQSGAVHAAISKSLI 90


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 325 YQTSYFKGSDRLLPEICRRSLKEGNQRHPSYNTIG 429
           Y   YF G D   PE C        QRH S N  G
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGSRNPTG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,520
Number of Sequences: 5004
Number of extensions: 51616
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)