Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C11
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           95   1e-19
11_01_0155 - 1287003-1287452                                           95   1e-19
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    32   0.78 
12_01_0727 + 6446283-6449300                                           28   9.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +2

Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
           + P+       EPILL G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVD
Sbjct: 45  IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVD 104

Query: 380 EASKKEIKDI 409
           EASKKE+KDI
Sbjct: 105 EASKKEVKDI 114



 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = +3

Query: 417 QYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
           +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 117 RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +1

Query: 85  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 225
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLK 53


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +2

Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
           + P+       EPILL G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVD
Sbjct: 45  IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVD 104

Query: 380 EASKKEIKDI 409
           EASKKE+KDI
Sbjct: 105 EASKKEVKDI 114



 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = +3

Query: 417 QYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
           +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 117 RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +1

Query: 85  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 225
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLK 53


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +2

Query: 275 DIRVTVKGGGHVAQVYAIRQAISKAL 352
           D+  TVKGGG   QV AIR  IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = -2

Query: 255 LPSKRIGSLKFV--LQQSGLNQVQWAPVYTQH--SMTTLAIRNCGGGFLTSEYLDGLDGL 88
           LPS  IG LK +  L+ SGL  V   P +  +  S+T L   +CG        +  L  L
Sbjct: 367 LPSS-IGKLKSLSLLEVSGLELVGSMPSWISNLTSLTILKFFSCGLSGPIPASIGNLTKL 425

Query: 87  TSCLLHSSHFDRE 49
           T   L++ HF  E
Sbjct: 426 TKLALYNCHFSGE 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,987
Number of Sequences: 37544
Number of extensions: 391333
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)