Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C11
(961 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 112 2e-24
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 112 2e-24
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 112 2e-24
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 112 2e-24
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 85 4e-16
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 71 8e-12
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 34 0.89
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 34 0.89
X90568-1|CAA62188.1|26926|Homo sapiens titin protein. 33 2.0
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 33 2.0
AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein. 33 2.0
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 112 bits (269), Expect = 2e-24
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +2
Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
+ P EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVD
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 380 EASKKEIKDILV 415
EASKKEIKDIL+
Sbjct: 102 EASKKEIKDILI 113
Score = 85.0 bits (201), Expect = 4e-16
Identities = 35/46 (76%), Positives = 45/46 (97%)
Frame = +1
Query: 91 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKL 51
Score = 72.9 bits (171), Expect = 2e-12
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 390 RRKSKTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
+++ K +QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 105 KKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 112 bits (269), Expect = 2e-24
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +2
Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
+ P EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVD
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 380 EASKKEIKDILV 415
EASKKEIKDIL+
Sbjct: 102 EASKKEIKDILI 113
Score = 85.0 bits (201), Expect = 4e-16
Identities = 35/46 (76%), Positives = 45/46 (97%)
Frame = +1
Query: 91 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKL 51
Score = 72.9 bits (171), Expect = 2e-12
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 390 RRKSKTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
+++ K +QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 105 KKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 112 bits (269), Expect = 2e-24
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +2
Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
+ P EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVD
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 380 EASKKEIKDILV 415
EASKKEIKDIL+
Sbjct: 102 EASKKEIKDILI 113
Score = 85.0 bits (201), Expect = 4e-16
Identities = 35/46 (76%), Positives = 45/46 (97%)
Frame = +1
Query: 91 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKL 51
Score = 72.9 bits (171), Expect = 2e-12
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 390 RRKSKTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
+++ K +QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 105 KKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 112 bits (269), Expect = 2e-24
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +2
Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 379
+ P EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVD
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 380 EASKKEIKDILV 415
EASKKEIKDIL+
Sbjct: 102 EASKKEIKDILI 113
Score = 85.0 bits (201), Expect = 4e-16
Identities = 35/46 (76%), Positives = 45/46 (97%)
Frame = +1
Query: 91 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKL 51
Score = 72.9 bits (171), Expect = 2e-12
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 390 RRKSKTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
+++ K +QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 105 KKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 85.0 bits (201), Expect = 4e-16
Identities = 35/46 (76%), Positives = 45/46 (97%)
Frame = +1
Query: 91 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKL 51
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 200 LSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAI 340
+ P EP+LLLGKE+F+ VDIRV VKGGGHVAQ+Y Q +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGESQEL 88
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 70.5 bits (165), Expect = 8e-12
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +2
Query: 242 LLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 412
LLL KE+ + +DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L
Sbjct: 67 LLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTL 122
Score = 45.6 bits (103), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 94 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 228
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKL 62
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 33.9 bits (74), Expect = 0.89
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 275 DIRVTVKGGGHVAQVYAIRQAISKALIAF 361
D+ TV GGG AQ AIR A++KAL +F
Sbjct: 327 DVTCTVSGGGRSAQAGAIRLAMAKALCSF 355
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 33.9 bits (74), Expect = 0.89
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 275 DIRVTVKGGGHVAQVYAIRQAISKALIAF 361
D+ TV GGG AQ AIR A++KAL +F
Sbjct: 233 DVTCTVSGGGRSAQAGAIRLAMAKALCSF 261
>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
Length = 26926
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 143 RIASVVMECCV*TGAHWTWLSPDCCSTNFXEPILLLGKEKFSMV 274
RI V+E G WT ++PDC ST F P LL ++ F V
Sbjct: 9445 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 9488
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 143 RIASVVMECCV*TGAHWTWLSPDCCSTNFXEPILLLGKEKFSMV 274
RI V+E G WT ++PDC ST F P LL ++ F V
Sbjct: 16869 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 16912
>AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.
Length = 26926
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 143 RIASVVMECCV*TGAHWTWLSPDCCSTNFXEPILLLGKEKFSMV 274
RI V+E G WT ++PDC ST F P LL ++ F V
Sbjct: 9445 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 9488
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,729,100
Number of Sequences: 237096
Number of extensions: 2241152
Number of successful extensions: 4856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4856
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12714176638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -