Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C11
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    98   9e-21

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 97.9 bits (233), Expect = 9e-21
 Identities = 42/71 (59%), Positives = 56/71 (78%)
 Frame = +2

Query: 197 WLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYV 376
           +L P        EP+LL+GKE+F  VDIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYV
Sbjct: 39  FLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYV 98

Query: 377 DEASKKEIKDI 409
           DE SK+E+K+I
Sbjct: 99  DEQSKRELKNI 109



 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 30/46 (65%), Positives = 42/46 (91%)
 Frame = +1

Query: 94  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQ 231
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQ
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQ 50



 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +3

Query: 390 RRKSKTS*LQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 515
           +R+ K     YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 103 KRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,907,486
Number of Sequences: 27780
Number of extensions: 307258
Number of successful extensions: 719
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)