Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C09
         (879 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   117   1e-28
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    25   0.78 
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    25   0.78 
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    24   1.8  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.7  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  117 bits (281), Expect = 1e-28
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
 Frame = +3

Query: 225 VKMTENDGK----EFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTG 392
           VK+T ND       F   G++P L++ +   G   PT IQK  I  +L+G D +  A+TG
Sbjct: 146 VKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTG 205

Query: 393 SGKTFAFALPIIQHLAED--PYGI-------FALVLTPTHELAYQIADQFTILGQPLKLR 545
           SGKT AF LPII +L  D  P            ++++PT ELA QIADQ         ++
Sbjct: 206 SGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVK 265

Query: 546 VCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSE 725
           V ++ GG+    +  ++    HI+VA PGRL D ++     S   +KY VLDEADR+   
Sbjct: 266 VAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNR-GNVSFNSLKYFVLDEADRMLDM 324

Query: 726 SFXXRLETIFS--ALPS--KRQXLLFSAT 800
            F   +E + S  ++P+  +RQ L+FSAT
Sbjct: 325 GFLGDVEEMLSHQSMPATGERQTLMFSAT 353


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 412 NANVFPDPVLAAPMQSSPVNNRDIQPF 332
           N NVFPDP    P +  P N +   PF
Sbjct: 397 NPNVFPDPEKFDPDRFLPENIQKRHPF 423


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 412 NANVFPDPVLAAPMQSSPVNNRDIQPF 332
           N NVFPDP    P +  P N +   PF
Sbjct: 397 NPNVFPDPEKFDPDRFLPENIQKRHPF 423


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 412 NANVFPDPVLAAPMQSSPVNNRDIQPF 332
           N +++PDP    P +  P N++   PF
Sbjct: 114 NPDIYPDPEKFDPERFRPENSQKRHPF 140


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 625 IATTICGLLANFS 587
           +   ICG+LANF+
Sbjct: 461 LKAAICGILANFT 473


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 625 IATTICGLLANFS 587
           +   ICG+LANF+
Sbjct: 461 LKAAICGILANFT 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,897
Number of Sequences: 336
Number of extensions: 4071
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)