Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C09
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 208 8e-55
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 181 1e-46
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 132 8e-32
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 131 1e-31
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 126 4e-30
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 124 2e-29
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 122 7e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 120 3e-28
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 119 5e-28
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 115 8e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 109 4e-25
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 105 1e-23
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 104 2e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 103 3e-23
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 101 2e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 100 5e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 97 3e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 1e-20
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 95 2e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 84 2e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 83 5e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 79 6e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 79 6e-16
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 39 0.001
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 31 0.16
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 2.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 28 2.0
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 27 3.5
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 26 6.1
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 26 6.1
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 208 bits (508), Expect = 8e-55
Identities = 108/195 (55%), Positives = 140/195 (71%), Gaps = 5/195 (2%)
Frame = +3
Query: 231 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFA 410
M+E+ K F+ LG+ PWLI L L I PT IQ+G I+++L G +CIG AKTGSGKT A
Sbjct: 1 MSEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAA 60
Query: 411 FALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL 590
FALPII+ ++DP GIFAL+LTPT ELA QI +QF LG L L+ ++ GG D I +S+
Sbjct: 61 FALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSI 120
Query: 591 KLAKRPHIVVAMPGRLADHI--SGCDTFS-LKKIKYLVLDEADRLFSESFXXRLETIFSA 761
L+KRPH+VVA PGRLAD I +G +T + L++IK+LV+DEADRL S +F L+ FS
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180
Query: 762 LPSK--RQXLLFSAT 800
LP+ RQ LLF+AT
Sbjct: 181 LPASEDRQTLLFTAT 195
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 181 bits (440), Expect = 1e-46
Identities = 88/184 (47%), Positives = 120/184 (65%)
Frame = +3
Query: 249 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPII 428
K F LGV L + LG +TPTPIQ+ I +L D IG A+TGSGKT AFALP+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 429 QHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRP 608
Q L +P FA+VL PT ELAYQI++QF +G + +R ++ GG D + +++ L+K+P
Sbjct: 106 QELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKP 165
Query: 609 HIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQXLL 788
H++V PGRL DH+ FSLK +KYL++DEADRL F ++ I +P +R+ LL
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLL 225
Query: 789 FSAT 800
FSAT
Sbjct: 226 FSAT 229
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 132 bits (318), Expect = 8e-32
Identities = 72/176 (40%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Frame = +3
Query: 282 LIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGI- 458
++K L LG PT IQ I L G D +GAA TGSGKT AF +PI++ L P +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 459 --FALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPG 632
L+L PT ELA Q T + + VC+ GG + +L KRP IV+A PG
Sbjct: 330 TTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPG 389
Query: 633 RLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQXLLFSAT 800
R DH+ F+++ I+ +V+DEADR+ + F L I A P RQ +LFSAT
Sbjct: 390 RFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSAT 445
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 131 bits (316), Expect = 1e-31
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Frame = +3
Query: 228 KMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTF 407
K F +G+ L++ + G + PTPIQ+ I LL G D +G A+TGSGKT
Sbjct: 62 KKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTA 121
Query: 408 AFALPIIQHLAED--PYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIE 581
AF +P+I+HL AL+L+P ELA Q + LR + GG E
Sbjct: 122 AFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEE 181
Query: 582 ESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSA 761
+ L+ +P IVVA PGR H+ L I+Y+V DEADRLF F +L I A
Sbjct: 182 QFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHA 240
Query: 762 LPSKRQXLLFSAT 800
LP+ RQ LLFSAT
Sbjct: 241 LPTSRQTLLFSAT 253
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 126 bits (304), Expect = 4e-30
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 4/166 (2%)
Frame = +3
Query: 315 TPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPY----GIFALVLTPT 482
T T IQK CI L G D +GAAKTGSGKT AF +P+I++L + G+ ALV++PT
Sbjct: 61 TLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 483 HELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCD 662
ELA Q + +G+ ++ GG++ EE +L+ R +I+V PGRL HI
Sbjct: 121 RELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAV 179
Query: 663 TFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQXLLFSAT 800
F ++ L+LDEADR+ F L+ I S+LP RQ +LFSAT
Sbjct: 180 NFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSAT 225
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 124 bits (299), Expect = 2e-29
Identities = 78/193 (40%), Positives = 105/193 (54%), Gaps = 7/193 (3%)
Frame = +3
Query: 243 DGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALP 422
D +A + P ++ L G P PIQ I G D IG A TGSGKT AF +P
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 423 IIQHLAE--DPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKL 596
I++H D + ALV+ PT ELA+QI F ++ +RV +TGG ++ L
Sbjct: 180 ILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLL 239
Query: 597 AKRPHIVVAMPGRLADHISGCD-TFSLKKIKYLVLDEADRLFSESFXXR----LETIFSA 761
K PH+VVA PGRL I+ + T + KKIK LVLDEADRL +S LE + +
Sbjct: 240 NKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 762 LPSKRQXLLFSAT 800
+ ++RQ +FSAT
Sbjct: 300 MHTQRQTFIFSAT 312
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 122 bits (294), Expect = 7e-29
Identities = 78/195 (40%), Positives = 111/195 (56%), Gaps = 8/195 (4%)
Frame = +3
Query: 240 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFAL 419
+D ++F+ L + + K + +G T T IQK I LL G D +GAAKTGSGKT AF +
Sbjct: 86 SDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLI 145
Query: 420 PIIQHLAEDPY----GIFALVLTPTHELAYQIADQFTILGQPLKLR---VCIVTGGSDQI 578
P I+ L + G ++++PT ELA QI F + + LK IV GG+++
Sbjct: 146 PTIEMLYALKFKPRNGTGVIIISPTRELALQI---FGVAKELLKYHHQTFGIVIGGANRR 202
Query: 579 EESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFS 758
E+ KL K +++VA PGRL DH+ F + ++ LV+DEADR+ F + I
Sbjct: 203 AEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMK 262
Query: 759 ALPSK-RQXLLFSAT 800
LPS+ RQ LLFSAT
Sbjct: 263 ILPSENRQTLLFSAT 277
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 120 bits (289), Expect = 3e-28
Identities = 68/197 (34%), Positives = 104/197 (52%)
Frame = +3
Query: 231 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFA 410
+T+ G EF +K L+ + G P+PIQ+ I L+G D + AK G+GKT A
Sbjct: 38 VTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
Query: 411 FALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL 590
F +P ++ + I L+L PT ELA Q + LG+ + ++V + TGG+ ++ +
Sbjct: 98 FVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDII 157
Query: 591 KLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPS 770
+L HIVV PGR+ D ++G + V+DEAD+L S F +E + S P
Sbjct: 158 RLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPK 216
Query: 771 KRQXLLFSATXHLMCVN 821
RQ L+SAT L+ N
Sbjct: 217 NRQISLYSATFPLIVKN 233
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 119 bits (287), Expect = 5e-28
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Frame = +3
Query: 255 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 434
F G +++K++ LG PTPIQ+ ++G D +G + TGSGKT ++ LP I H
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 435 LAEDPY-----GIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLA 599
+ P G LVL PT ELA QI + T G+ ++R V GG + + L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 600 KRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQ 779
+ I +A PGRL D + T +L+++ YLVLDEADR+ F ++ I + RQ
Sbjct: 244 RGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 302
Query: 780 XLLFSAT 800
++FSAT
Sbjct: 303 TVMFSAT 309
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 115 bits (277), Expect = 8e-27
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Frame = +3
Query: 267 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAED 446
G+ I + +LG PT IQ I + +G D IG AKTGSGKT AF LP+ +H+ +
Sbjct: 424 GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ 483
Query: 447 -PY----GIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPH 611
P G A+++TPT ELA QI + + L +R C GG+ ++ L +
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 612 IVVAMPGRLADHIS--GCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQXL 785
IVV PGR+ D +S +L + YLVLDEADR+F F ++ I + + RQ +
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Query: 786 LFSAT 800
LFSAT
Sbjct: 604 LFSAT 608
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 109 bits (263), Expect = 4e-25
Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Frame = +3
Query: 267 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAED 446
G+ ++K L + + P+ IQ+ I LL D IG A+TGSGKT AF +P+I +++
Sbjct: 255 GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
Query: 447 P--------YGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK 602
P G +A+VL PT ELA QI + +PL R V GG E+S ++++
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQ 374
Query: 603 RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPS 770
HIVVA PGRL D + F L + Y+V+DEADR+ F + I S+LPS
Sbjct: 375 GAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS 429
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 105 bits (251), Expect = 1e-23
Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Frame = +3
Query: 312 RTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH---LAEDPYGIFALVLTPT 482
+ PTPIQ LL G D +G A+TGSGKT AF +P +Q+ L+++ LV++PT
Sbjct: 186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPT 245
Query: 483 HELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCD 662
ELA Q + L Q L+ +V GG+ + E++ + AK +++ PGRL D I+
Sbjct: 246 RELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLDLIND-G 303
Query: 663 TFSLKKIKYLVLDEADRLFSESFXXRLETIFSALP-----SKRQXLLFSAT 800
+ ++ YLVLDEADR+ F + I S P RQ + FSAT
Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 104 bits (249), Expect = 2e-23
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Frame = +3
Query: 237 ENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFA 416
E+ K F+ + P L + + PT +Q I L G D + A+TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 417 LPIIQ------HLAEDPYGIFALVLTPTHELA---YQIADQFTILGQPLKLRVCIVTGGS 569
+PI++ + E+ GIFAL+L PT ELA Y + ++ T + + T S
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 570 DQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLET 749
D ++ L L P IV+A P R H++ L K+K+LV+DEAD + S + ++T
Sbjct: 130 DTVQRPL-LLDLPDIVIATPSRCVVHVAS-GVLPLDKLKFLVIDEADLMLSFGYNEDMKT 187
Query: 750 IFSALPSKRQXLLFSAT 800
+ +LP Q L SAT
Sbjct: 188 LSRSLPRGTQSFLMSAT 204
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 103 bits (247), Expect = 3e-23
Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Frame = +3
Query: 303 LGIRTPTPIQKGCISRLLTGDD--CIGAAKTGSGKTFAFALPIIQHLAEDPY-------G 455
+ I PT IQ C+ LL DD A+TGSGKT A+ LPI+Q L P G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 456 IFALVLTPTHELAYQIADQFTILGQ-PLKLRV--CIVTGGSDQIEESLKLAKRPHIVVAM 626
I+A+++ PT EL QI + L PL + C V GG + E ++ K +I++
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 627 PGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSK 773
PGRLADH+ + + +++++VLDE DRL F L I S L S+
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQ 325
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 101 bits (241), Expect = 2e-22
Identities = 59/187 (31%), Positives = 95/187 (50%)
Frame = +3
Query: 240 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFAL 419
N F + +K L++ + G TP+ +Q I ++ G D I A++G+GKT F++
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
Query: 420 PIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLA 599
I+Q + AL+L+PT ELA QI + LG + ++ GG+ + KL
Sbjct: 78 GILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Query: 600 KRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQ 779
H+V PGR+ D I + +K L+LDEAD L ++ F ++ I+ LP Q
Sbjct: 138 YGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQ 196
Query: 780 XLLFSAT 800
++ SAT
Sbjct: 197 VVVVSAT 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 99.5 bits (237), Expect = 5e-22
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Frame = +3
Query: 270 VKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDP 449
+KP L++ + G P+ +Q+ CI + + G D + AK+G GKT F L +Q +
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 450 YGIFALVLTPTHELAYQIADQFTILGQPL-KLRVCIVTGGSD--QIEESLK-LAKRPHIV 617
+ LVL T ELA+QI +++ + L +R + GG + Q E+ K +K PHIV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 618 VAMPGRLADHISGCDTFSLKKIKYLVLDEADRLF-SESFXXRLETIFSALPSKRQXLLFS 794
VA PGRL + + + +K+ VLDE D+L S ++ +F A P ++Q ++FS
Sbjct: 178 VATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 795 AT 800
AT
Sbjct: 237 AT 238
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 97.1 bits (231), Expect = 3e-21
Identities = 58/182 (31%), Positives = 89/182 (48%)
Frame = +3
Query: 255 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 434
F + +KP L++ + G P+ IQ+ I +L D + A++G+GKT F++ ++Q
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 435 LAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAKRPHI 614
+ AL+L PT ELA QI LG + + GG+ ++ L H+
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 615 VVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKRQXLLFS 794
VV PGR+ D I ++ VLDEAD + S F ++ IF LP Q +L S
Sbjct: 141 VVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLS 199
Query: 795 AT 800
AT
Sbjct: 200 AT 201
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 95.1 bits (226), Expect = 1e-20
Identities = 68/195 (34%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Frame = +3
Query: 255 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQH 434
F + + WL + G + TP+Q I L D + A TGSGKT A+ LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 435 LAE---DPYGIFALVLTPTHELAYQI--------ADQFTILGQPLKLRVCIVTGGSDQIE 581
+ D G+ AL++ PT ELA QI A Q L KL + GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 582 ESLK--LAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIF 755
L K P +V+ PGRL + +S S K ++ L+LDEAD L F L++I
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLS---HISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 756 SALPSKRQXLLFSAT 800
S LP +R+ LFSAT
Sbjct: 180 SQLPKQRRTGLFSAT 194
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 94.7 bits (225), Expect = 2e-20
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Frame = +3
Query: 225 VKMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLT-----------GDDC 371
+ + N EF+ L + L+++L I +Q + LL GD C
Sbjct: 118 ITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVC 177
Query: 372 IGAAKTGSGKTFAFALPIIQHLAEDPYG-IFALVLTPTHELAYQIADQFTILGQPLKLRV 548
+ AA TGSGKT ++ +PI+Q L+ + +V+ PT EL Q+A F L+V
Sbjct: 178 VSAA-TGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQV 236
Query: 549 CIVTGGSDQIEESLKLAK-----RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADR 713
C TG E+ +L R ++V+ PGRL DHI ++FSL+ ++Y+V+DEADR
Sbjct: 237 CAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADR 296
Query: 714 LFSESFXXRLETI 752
L +SF ++T+
Sbjct: 297 LLDQSFQDWVDTV 309
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 84.2 bits (199), Expect = 2e-17
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Frame = +3
Query: 282 LIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHL-AEDPYGI 458
L + L I T IQ+ I + + D + A TGSGKT A+ PI+Q L P G
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 459 FALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESL-KLAKRPHIVVAMPGR 635
A+++ PT EL QI Q L L++ ++ +++I+E KL ++ + + P R
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR 176
Query: 636 LADHISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSALPSKR-QXLLFSAT 800
L I S +K+++ V+DEADRLF F + + I SA S LFSAT
Sbjct: 177 LVQAIQ--TGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSAT 230
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.0 bits (196), Expect = 5e-17
Identities = 68/206 (33%), Positives = 96/206 (46%), Gaps = 23/206 (11%)
Frame = +3
Query: 252 EFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQ 431
EF + L++ + G PTP+QK I + +G D + A+TGSGKT F PI+
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229
Query: 432 HLAED--PYGI-----------------FALVLTPTHELAYQIADQFTILGQPLKLRVCI 554
LA D P + L+L PT EL QI ++ +R C
Sbjct: 230 -LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 555 VTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFX 734
V GG+D + ++ + ++ A PGRL D I SL IK+LVLDEADR+ F
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDR-GRISLANIKFLVLDEADRMLDMGFE 347
Query: 735 XRLETIFSALP----SKRQXLLFSAT 800
++ I +RQ L+FSAT
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSAT 373
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 79.4 bits (187), Expect = 6e-16
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Frame = +3
Query: 306 GIRTPTPIQKGCISRLLTGDD-CIGAAKTGSGKTFAFALPIIQHLAE-----DPYGIFAL 467
G TP+Q+ ++ + ++ + AKTG+GKT AF L + + + + I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 468 VLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK-RPHIVVAMPGRLAD 644
+L+PT ELA QI ++ L +RV GG+ ++ E + + ++++A PGRL D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 645 HISGCDTFSLKKIKYLVLDEADRLFSESFXXRLETIFSAL-PSKRQXLLFSAT 800
H+ +LDEADRL F + I A+ +K + L FSAT
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSAT 229
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 79.4 bits (187), Expect = 6e-16
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
Frame = +3
Query: 249 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLTGD--DCIGAAKTGSGKTFAFALP 422
K F L +KP L+K + ++ + P+ IQ+ + LL+ + IG +++G+GKT AFAL
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 423 IIQHLAEDPYGIFALVLTPTHELAYQIADQFTILGQPLKLRVCIVTGGSDQIEESLKLAK 602
++ + A+ L P+ ELA QI D T +G+ +++ G D + + K+
Sbjct: 174 MLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF--GIKDSVPKGAKIDA 231
Query: 603 RPHIVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLF-SESFXXRLETIFSALPSKRQ 779
+ IV+ PG + D + + IK VLDEAD + + + I LP Q
Sbjct: 232 Q--IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 288
Query: 780 XLLFSAT 800
+LFSAT
Sbjct: 289 IVLFSAT 295
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 38.7 bits (86), Expect = 0.001
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Frame = +3
Query: 330 QKGCISRLLTGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHELAY-QIA 506
Q I+ L G I + T SGK+ + +PI+Q L ED A + PT LA Q
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQST-AFFVFPTKSLAQDQKK 374
Query: 507 DQFTILG-QPLKLRVCIVT-GGSDQIEESLKLAKRPHIVVAMPGRLADHI---SGCDTFS 671
IL P + + T G +E + + +I+ P L I + +
Sbjct: 375 SLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNANRWYYF 434
Query: 672 LKKIKYLVLDEA 707
K +K VLDEA
Sbjct: 435 FKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 357 TGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHEL 491
T D A GSGKT L ++ H +++ YG A+ + P E+
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGT-AVYIAPIQEI 1422
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 391 PVLAAPMQSSPVNNRDIQPF--WIGVGVLIPNV-SNCLISHGFTPNTANSFPS 242
P + +PM+ SP N + + P+ +G G + SN S GF P T S PS
Sbjct: 221 PSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPS 273
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 690 LVLDEADRLFSESFXXRLE 746
LV D AD LFSESF RL+
Sbjct: 678 LVYDMADELFSESFLSRLD 696
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 3.5
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 354 LTGDDCI--GAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHELAYQIADQFTILG 527
L G +C+ GAAK G F+ A Q A I L PT E A ++A++ +
Sbjct: 19 LKGKNCVVFGAAK---GIGFSIATAFAQ--AGGNVIITYLTTDPT-EKAKKLAEETGVQV 72
Query: 528 QPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPG 632
LK+ + +EE K+ K H+VVA G
Sbjct: 73 HTLKIDISRSDTVEAGVEEIQKIFKEIHVVVANAG 107
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 FYPCSIILLL*ADSNNHSAKLIDNYL 195
F+P I+LL+ N + KL+D YL
Sbjct: 123 FFPAYIMLLIQRQEYNKAMKLLDEYL 148
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 435 SAG*WVGQMQMSFLTPFWQLQCSHHQS-IIAIYNLFGLELVF 313
++G W+G +SF TPF I A NLF ++F
Sbjct: 408 TSGNWLGNFMISFFTPFINNAIGFKLGYIYACINLFSSFMIF 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,371
Number of Sequences: 5004
Number of extensions: 66763
Number of successful extensions: 224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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