Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C08
         (1027 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   8.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 735 PPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXP 839
           P    P  G     PP   GGP   G P  G   P
Sbjct: 47  PGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 752 GAXXGGXPPGGRPFXXF 702
           G   GG PP G P+  F
Sbjct: 67  GPPSGGQPPQGMPYPRF 83


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -3

Query: 761 PXXGAXXGGXPPGGRPFXXFXXXXPP 684
           P  G   GG PP   PF       PP
Sbjct: 191 PSFGIFPGGAPPLVSPFLAAMAHRPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,819
Number of Sequences: 336
Number of extensions: 4569
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29176451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)