Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C08
(1027 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.037
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.037
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.049
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.80
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 2.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.2
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.5
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.037
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +1
Query: 835 PPXXXXXXXPPPXLPPKXPXXGPXXGXXPXXX-RXXPXPXXLPPXXXPAXXXLXPPPPP 1008
PP PP PP+ P P + P P LPP PA PP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.037
Identities = 27/108 (25%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Frame = +3
Query: 717 PPPRGXPPXXGPXX--GXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQXX 890
PPPR P G PPPP P P P P PPP P +
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 891 P-----XXTXXXXXPXXVXXXXXPPXSPPXXGTXXXXXXXPPPPXXPP 1019
P P PP +PP P PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 32.7 bits (71), Expect = 0.086
Identities = 32/120 (26%), Positives = 35/120 (29%), Gaps = 17/120 (14%)
Frame = +3
Query: 711 KRPPP--------RGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPP 866
KRPPP RG PP PPPP P P G P PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG---RSAPPPPP 365
Query: 867 PXSPP----QXXP-----XXTXXXXXPXXVXXXXXPPXSPPXXGTXXXXXXXPPPPXXPP 1019
P S P Q P + P + P P + P PP PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
Score = 32.7 bits (71), Expect = 0.086
Identities = 28/119 (23%), Positives = 31/119 (26%), Gaps = 1/119 (0%)
Frame = +2
Query: 530 PXXKNRPPPXXXXXGLGXPXXXPPXXPXXPPXGGGGGXPXPXGGXKXXPXXXGGXXXKXL 709
P +PPP + P PP P G P G L
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIP------GRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 710 XKAAPPGXPPXXRPPXG-GXXXXPPPPRGGXXQXGXPXXRGGXPPRXXXXXTPPXXSPP 883
+APP PP P G PP P P PP PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 31.5 bits (68), Expect = 0.20
Identities = 22/98 (22%), Positives = 23/98 (23%)
Frame = +3
Query: 726 RGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQXXPXXTX 905
R PP PPP G P G P PP PP P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Query: 906 XXXXPXXVXXXXXPPXSPPXXGTXXXXXXXPPPPXXPP 1019
+ PP P P P PP
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +1
Query: 823 PGGXPPXXXXXXXPPPXLPPKXPXXGPXXGXXPXXXRXXPXPXXLPPXXXPA 978
P PP P LPP P P P P PP PA
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/38 (28%), Positives = 13/38 (34%)
Frame = -3
Query: 581 PPXPXXGXXGGGGFXXXGETPPPPPPXXXKXXXPPPXG 468
P P + PPPPPP + PP G
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328
Score = 26.6 bits (56), Expect = 5.7
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = +1
Query: 823 PGGXPPXXXXXXXP--PPXLPPKXPXXGPXXGXXPXXXR-XXPXPXXLP--PXXXPAXXX 987
P PP P PP PP P P P P P +P P PA
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 988 LXPPPPP 1008
P P P
Sbjct: 476 PPPAPAP 482
Score = 26.2 bits (55), Expect = 7.5
Identities = 25/112 (22%), Positives = 25/112 (22%), Gaps = 5/112 (4%)
Frame = +3
Query: 549 PPPGXXXRXWGXPPXPPPXXXXXXXXXXXXXXXXXXXXXKXXPXXXGXXXXKXXKRPP-- 722
PPP R PP PPP P PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 723 PRGXP---PXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPP 869
P P P P PP P G P P P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -3
Query: 581 PPXPXXGXXGGGGFXXXGETPPPPPP 504
PP P G G + PPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 25.0 bits (52), Expect(2) = 0.71
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 661 PPXGXGXPPPPP 626
PP G PPPPP
Sbjct: 354 PPQGRSAPPPPP 365
Score = 23.0 bits (47), Expect(2) = 0.71
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -1
Query: 523 PPPPPPLXXXKXXXPPP 473
PPPPPP PP
Sbjct: 361 PPPPPPRSAPSTGRQPP 377
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.049
Identities = 24/101 (23%), Positives = 25/101 (24%)
Frame = +3
Query: 717 PPPRGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQXXPX 896
P P PP G PP P P P G P PP P P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP- 1102
Query: 897 XTXXXXXPXXVXXXXXPPXSPPXXGTXXXXXXXPPPPXXPP 1019
V P +PP P P PP
Sbjct: 1103 --PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 32.3 bits (70), Expect = 0.11
Identities = 34/139 (24%), Positives = 37/139 (26%), Gaps = 13/139 (9%)
Frame = +2
Query: 584 PXXXPPXXPXXP-PXGGGGGXPXPXGGXKXXPXXXGGXXXKXLXKAAPP-----GXPPXX 745
P P P P P P P P G AAPP G PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 746 RP-----PXGGXXXXPPPPRGGXXQXGXPXXRGGXPPRXXXXXTPPXXSPPK--XPXXDP 904
+P P PP P+ P G PP P PP P P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Query: 905 SXXXXPXGXXXXXXPXXSP 961
S P P +P
Sbjct: 1204 SVGVPPVPPPSTAPPVPTP 1222
Score = 31.9 bits (69), Expect = 0.15
Identities = 29/126 (23%), Positives = 30/126 (23%), Gaps = 2/126 (1%)
Frame = +2
Query: 551 PPXXXXXGLGXPXXXPPXXPXXP-PXGGGGGXPXPXGGXKXXPXXXGGXXXKXLXKAAPP 727
PP P P P P P P P G P G APP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 728 GXPPXXR-PPXGGXXXXPPPPRGGXXQXGXPXXRGGXPPRXXXXXTPPXXSPPKXPXXDP 904
P PP PP P P PP P S P+ P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Query: 905 SXXXXP 922
P
Sbjct: 1260 HSNASP 1265
Score = 31.9 bits (69), Expect = 0.15
Identities = 22/84 (26%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
Frame = +3
Query: 717 PPPRGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQ--XX 890
P P G PP P PP P P P G P P PP P
Sbjct: 1153 PAPSGAPPVPKPSVA----APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 891 PXXTXXXXXPXXVXXXXXPPXSPP 962
P P PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 31.1 bits (67), Expect = 0.26
Identities = 23/101 (22%), Positives = 24/101 (23%), Gaps = 2/101 (1%)
Frame = +3
Query: 720 PPRGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXP--XXPPPXSPPQXXP 893
PP P P PP P P P G P P PP P + P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 894 XXTXXXXXPXXVXXXXXPPXSPPXXGTXXXXXXXPPPPXXP 1016
P PP P G P P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 9.9
Identities = 20/87 (22%), Positives = 21/87 (24%), Gaps = 3/87 (3%)
Frame = +2
Query: 713 KAAPPGXP---PXXRPPXGGXXXXPPPPRGGXXQXGXPXXRGGXPPRXXXXXTPPXXSPP 883
K PP P P P PP P+ P PP PP P
Sbjct: 988 KDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPT 1047
Query: 884 KXPXXDPSXXXXPXGXXXXXXPXXSPP 964
P S P P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIP 1074
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +1
Query: 862 PPPXLPPKXPXXGPXXGXXPXXXRXXPXPXXLPPXXXPAXXXLXPPPPPXXXXXG 1026
PPP + P P P P P PP A PPPPP G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = +3
Query: 717 PPPR---GXPPXXGPXXGXXXXGPPPPGGGP 800
PPP G PP P G GPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 530 GETPPPPPPXXXKXXXPPP 474
G PPPPPP PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 530 GETPPPPPPXXXKXXXPPP 474
G PPPPPP PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = -2
Query: 660 PPXGXG--XPPPPPXGGXXGXXGGXXXGXPXPXXXXXGGGRFFXXG*NPPPPP 508
PP PPPPP G G G P P GG R++ P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAG--AGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 523 PPPPPPLXXXKXXXPPPGAXXFXGXXSGGXR 431
PPPPPP PPP +GG R
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 590 GXGPPXPXXGXXGGGGFXXXGETPPPPPP 504
G PP P G G G PPPPPP
Sbjct: 760 GPPPPPPPPGVAGAG------PPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.5
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +3
Query: 711 KRPPPRGXPPXXGPXXGXXXXGPPPPG---GGPXXXGXPXPGGGXPXXXXPXXPPP 869
K PPP P P PPP GGP P PG P PPP
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.80
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Frame = -1
Query: 652 GXGXPPPPPXG-GGXGXXG---------GGXGGXPQXRXXXPGG 551
G G PPP P G GG G G GG GG P PGG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 622 GGGXGXXGGGXGGXP 578
GGG G GGG GG P
Sbjct: 187 GGGFGGFGGGSGGPP 201
Score = 25.8 bits (54), Expect = 9.9
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -3
Query: 1025 PXXXXXGGGGGXXXXXAGXXXGGRXXGXGXXLXXXGXXPXXGPXXGXLGGRXGGGXXXXX 846
P G GG G GG G G G G GG GG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Query: 845 XXGGXPPG 822
GG P G
Sbjct: 260 GFGGGPGG 267
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 522 PPPPPPXXXKXPXXPPXGP 466
PPPPPP + P PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 722 PPGXPPXXRPPXGGXXXXPPPP 787
PPG PP PP G PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 530 GETPPPPPPXXXKXXXPPP 474
G PPPPPP + PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPP 25
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 545 GFXXXGETPPPPPPXXXK 492
GF + PPPPPP K
Sbjct: 17 GFEPPSQPPPPPPPGYVK 34
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 652 GXGXPPPPPXGGGXGXXGGGXGGXPQXRXXXPGGGAVFXXXVKPP 518
G PPPP GG G G GG P PGG F + P
Sbjct: 72 GNAAPPPPGAEGG---PGAGFGGFP---GAGPGGARTFHFNMGGP 110
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +3
Query: 717 PPPRGXPPXXGPXXGXXXXGPPPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQXXP 893
PP R P P PPPP P P G P P P +P P
Sbjct: 1690 PPVR--PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +2
Query: 716 AAPPGXPPXXRPPXGGXXXXPPPPRGGXXQXGXPXXRGGXPPRXXXXXTPPXXSP 880
+ PP P PP PPPP P G PP P +P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG-PPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Frame = +3
Query: 717 PPPRGXPPXXG--PXXGXXXXGPPPPGGGPXXXGXPXPG 827
PPP PP P PPPP P PG
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -3
Query: 1007 GGGGGXXXXXAGXXXGGRXXGXGXXLXXXGXXPXXGPXXGXLGGRXGG 864
GG GG G GGR G G G G GG GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +3
Query: 723 PRGXPPXX--GPXXGXXXXGPPPPGGGPXXXGXPXPG 827
P G P GP G PPPP G G P PG
Sbjct: 109 PLGQAPVGLAGPVRGVGYTAPPPPAG--FGRGAPPPG 143
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 7.5
Identities = 22/86 (25%), Positives = 22/86 (25%), Gaps = 6/86 (6%)
Frame = +3
Query: 780 PPPGGGPXXXGXPXPGGGXPXXXXPXXPPPXSPPQXXPXXTXXXXXPXX------VXXXX 941
PPP P P P P PPP PP P
Sbjct: 167 PPPSFQPPSAAAPATS--LPSDYNPPPPPP--PPPAVEDQAADANEPDDYYSSGRAVSPE 222
Query: 942 XPPXSPPXXGTXXXXXXXPPPPXXPP 1019
PP P PPPP PP
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPPTLPP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,161
Number of Sequences: 5004
Number of extensions: 46945
Number of successful extensions: 432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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