Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C08
         (1027 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
 Frame = +3

Query: 750 PXXGXXXXGPPPPGG--GPXXXGXPXPGGGXPXXXXPXXPPPXSPPQ 884
           P  G     P P      P     P P  G P    P  PP  +P Q
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect(2) = 1.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 526  KPPPPPP 506
            +PPPPPP
Sbjct: 1858 EPPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 1.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 661  PPXGXGXPPPPP 626
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 10  LXYRLHXLRATLPLXXLNCCVLFC 81
           L   L+ L ATLPL    C VL C
Sbjct: 136 LLLMLYLLFATLPLRLSFCVVLAC 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,599
Number of Sequences: 438
Number of extensions: 9900
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)