Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_C06
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 34 0.13
03_02_0483 - 8804021-8804485 34 0.13
03_02_0485 - 8808139-8808618 34 0.17
03_02_0478 + 8775892-8776377 33 0.30
01_01_0229 - 1943473-1943922 30 2.8
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 3.7
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 29 4.9
01_01_0231 + 1951047-1951499 29 4.9
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 4.9
12_01_0946 + 9376037-9376318 29 6.5
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 6.5
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 8.6
>03_02_0484 + 8805053-8805538
Length = 161
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 342 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPX 497
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 498 HCRIS 512
+ S
Sbjct: 130 QIKAS 134
>03_02_0483 - 8804021-8804485
Length = 154
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 342 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPX 497
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 498 HCRIS 512
+ S
Sbjct: 123 QIKAS 127
>03_02_0485 - 8808139-8808618
Length = 159
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 342 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPX 497
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 498 HCRIS 512
+ S
Sbjct: 128 QIKAS 132
>03_02_0478 + 8775892-8776377
Length = 161
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 342 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPX 497
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 498 HCRIS 512
+ S
Sbjct: 130 QIKAS 134
>01_01_0229 - 1943473-1943922
Length = 149
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = +3
Query: 276 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 440
A AN V T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 38 AFANARVDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 95
Query: 441 YISR---QFTRRYALPENCNPXHCRIS 512
+ R QF RR+ LPEN + S
Sbjct: 96 RVERSSGQFMRRFRLPENAKVDQVKAS 122
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 255 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADG 392
Y+ W++ AMA + + ++ VN D + SP + T DG
Sbjct: 214 YKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDG 259
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 642 NFRSGLLNLLPDRAGLSDGNSSLVLRGSRSPGSDHGQHAVRGQPR----FDSVRGY 487
+FR G+L L +G VL G ++ G HG V G P+ F V GY
Sbjct: 700 SFRPGVLTALMGISGAGKTTLLDVLAGRKTSGHIHGNITVSGYPKKQETFSRVSGY 755
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 276 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 440
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 441 YISR---QFTRRYALPEN 485
+ R QF RR+ LPEN
Sbjct: 97 RVERSSGQFMRRFRLPEN 114
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 276 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 440
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 441 YISR---QFTRRYALPEN 485
+ R QF RR+ LPEN
Sbjct: 97 RVERSSGQFMRRFRLPEN 114
>12_01_0946 + 9376037-9376318
Length = 93
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 225 VITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 395
++T T S RPWK N D T T + + + +++ +P +I + GY
Sbjct: 2 IVTTTSSTTTTRPWKTPTRENHDNQHTPTRSHN---IQANIRQDTPPDIDFRDRHGY 55
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +2
Query: 107 RILK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 253
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 255 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTAD 389
Y+ W++ AMA + + ++ VN+D + SP +V T D
Sbjct: 265 YKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVD 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,033
Number of Sequences: 37544
Number of extensions: 411599
Number of successful extensions: 1454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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