Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C03
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   6.2  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 505 GYLVWNTSLQSLQYSSGKFQPIFMELFVGLTNEPVKQVSKRRPKLQPCST 654
           G  VWN   +  ++   +F P  +   +GL +     +S R  KL  C +
Sbjct: 64  GRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGS 113


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 389 ELCQPDKTFEIM*SKLNSVLHQNKKLDGDGLNVY 490
           +L +    +E   +KLNS + Q KK+ G  L+ Y
Sbjct: 149 DLSEKKDAYEYSCNKLNSYMRQTKKMTGRELDKY 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,026
Number of Sequences: 5004
Number of extensions: 76555
Number of successful extensions: 190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)