Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C03
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 622 KRRPKLQPCSTNALX*VYMVFVHLCERRIHNSANDLVDMYHIL 750
           + R KLQP   +     Y+++  LC R      N+L+  Y+ L
Sbjct: 30  RTRTKLQPTYFHH---TYIIYESLCGRHEKRLLNELLSSYNTL 69


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 622 KRRPKLQPCSTNALX*VYMVFVHLCERRIHNSANDLVDMYHIL 750
           + R KLQP   +     Y+++  LC R      N+L+  Y+ L
Sbjct: 30  RTRTKLQPTYFHH---TYIIYESLCGRHEKRLLNELLSSYNTL 69


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 114 ILNTRSTKINMQHKVLPNLTKFQKS 40
           IL+ R TKI ++   L NLTK+ K+
Sbjct: 219 ILHLRHTKIWLRPDWLFNLTKYGKN 243


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 141 NRINSIIMPKSDENEDWIEKME 206
           N +   ++PK  E +DW   ME
Sbjct: 69  NNVTMQLLPKLMEFDDWTSVME 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,719
Number of Sequences: 438
Number of extensions: 4913
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)