Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C01
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    29   3.7  
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392...    29   6.5  

>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
 Frame = +1

Query: 481 INELLKENRLVSAQEKFAVRKKLNIRIPDYDDPLCLPVKAVKQDNSDLKRLGVWNNVC-- 654
           +NE+ KE R+     K  V   +N    +YD  + LP +  +Q  S  K   V +     
Sbjct: 149 LNEICKEVRVKPLSSKVEVDLDINTECENYDPEVPLPSRLTEQTLSSSKAADVADYAVGV 208

Query: 655 ----IEHFKHCDTMLRPERGRTHSSS 720
               + H  H D +++      H +S
Sbjct: 209 LRGNLVHLNHIDAVMQLRPSMLHVNS 234


>05_01_0479 -
           3920992-3921513,3921643-3921756,3921905-3922482,
           3922709-3923067,3923132-3923205
          Length = 548

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +1

Query: 514 SAQEKFAVRKKLNIRIPDYDDPLC-LPVKAVKQDNSDLKRLGVWNNVCIEHFKHCDTMLR 690
           ++  +  V K  NI  P++D P+  L +   +   S    L + NN         D + R
Sbjct: 7   ASSSQATVNKSGNITSPNWDKPVTELQLNLTQLKLSRDGNLVISNNATGSILWSTDIVNR 66

Query: 691 PERGRTHSSSRSVVLRNVPNKQTGXIETTIW 783
                T +++ SVVL N  N   G     +W
Sbjct: 67  TSSATTMNNTASVVLSNDGNLVIGSSSNVLW 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,210
Number of Sequences: 37544
Number of extensions: 241123
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)