Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_C01
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homol...    29   4.4  

>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 719 DELCVLPRSGLSMVSQCLKCSMQTLFHTPNLFR 621
           ++ CV+ ++ L+  ++C  CS+Q L H    FR
Sbjct: 32  NDTCVIAQANLTTPNECQLCSIQNLMHIQKRFR 64


>AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homolog
           protein 1 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 682 WYHSA*NALCKHYSTLPTSLDHCY 611
           WY+   N + KHY T P  LD  Y
Sbjct: 255 WYYRDLNQMAKHYGTEPVLLDAAY 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,494
Number of Sequences: 27780
Number of extensions: 234400
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)