Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B23
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    28   2.0  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   4.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   6.2  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 648 RMAVLAVIVTPSFVTSFWIFATNYCESIFIC 556
           R+  L  ++  S  T++W    +YC S+ IC
Sbjct: 178 RLGDLYFVLAQSNATNYWFSLKHYCRSVEIC 208


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 472  KQSHLTAKIASLNKQCLKRKSE 537
            +Q+ L ++IASLN Q  K+KSE
Sbjct: 942  EQASLKSEIASLNSQLAKQKSE 963


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 344 MTAKIASLNKQCLKRKEYLRNYTTYKYR 427
           +T KIA L   C  RK +  +  T +YR
Sbjct: 354 ITVKIADLGNACWTRKHFTNDVQTRQYR 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,052
Number of Sequences: 5004
Number of extensions: 48311
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)