Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    38   0.002
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    37   0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    33   0.056
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    33   0.074
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   1.6  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    28   2.1  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   2.1  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   4.9  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 13/36 (36%), Positives = 27/36 (75%)
 Frame = +3

Query: 129 SCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN 236
           SC V++G IP++  E+ ++ +F+Q+G +  F+L+I+
Sbjct: 4   SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID 39


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +3

Query: 111 GPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRG--CVPFDKQL 281
           GPEP    +VF+  I      + L   F+  GE+F+  L +N ++G + G  C+ FDK+ 
Sbjct: 89  GPEPPT--QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRS 146

Query: 282 SHIHIAHPADDAVRR 326
           S    AH A  AV++
Sbjct: 147 SISVAAHSAKIAVQQ 161


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 138 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN 236
           VF+G IP+D  E  +  +F Q G +  F+L+++
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLD 41


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 32.7 bits (71), Expect = 0.074
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 117 EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN 236
           E  ++ ++F+G +P DC E+     F Q G + +  LM++
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 108 TGPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLM-INFSGWNRG 257
           T P      ++FIG +  +  +DSL   F+Q GE+ +  +M  + +G +RG
Sbjct: 155 TSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRG 205


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 123 SRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGCVPFDKQLSHIHIAH 302
           S +  +F+  + + C ED L  LF   G+L +  + I+    N       K  ++I   H
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN------PKGFAYIDF-H 372

Query: 303 PADDAVR 323
            ADDAVR
Sbjct: 373 DADDAVR 379


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 138 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN 236
           +++GR+PH  +E  +   F Q G +   R+  N
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 138 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF 239
           +F+GRIP     + ++  F+  G++ + +LM  F
Sbjct: 6   LFVGRIPPQATREDMMDFFKGYGQILDCKLMNGF 39


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 123 SRSCEV--FIGRIPHDCFEDSLVPLFQQAGELFEFRLM 230
           ++ CE+  ++G +P  C    L  LF+  G   +F ++
Sbjct: 15  TKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHML 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,669
Number of Sequences: 5004
Number of extensions: 35148
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)