Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B22
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    58   9e-09
Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical pr...    38   0.010
AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative RNA-...    38   0.010
Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical pr...    32   0.65 
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    31   1.5  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        31   1.5  
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
 Frame = +3

Query: 51  YTLTQINGQRIYRKATHAWTGPEPS---RSCEVFIGRIPHDCFEDSLVPLFQQAGELFEF 221
           YT+    GQR +      W GP      +  E+++G IP D FED+LVPLF+++G++++ 
Sbjct: 170 YTIEVTIGQRKFGGPPPDWEGPATGPAGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDL 229

Query: 222 RLMIN-FSGWNRG 257
           RLM++  SG +RG
Sbjct: 230 RLMMDPMSGASRG 242


>Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical
           protein C17D12.2 protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +3

Query: 135 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGC 260
           ++F+G+IP +  E  L  LF+Q G+++EF ++ + ++G ++GC
Sbjct: 30  KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGC 72



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 135 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGC 260
           ++FIG +     ED +  LF   GEL E  ++    G ++GC
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGC 166


>AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative
           RNA-binding protein protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +3

Query: 135 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGC 260
           ++F+G+IP +  E  L  LF+Q G+++EF ++ + ++G ++GC
Sbjct: 30  KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGC 72



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 135 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGC 260
           ++FIG +     ED +  LF   GEL E  ++    G ++GC
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGC 166


>Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical
           protein C54C8.3 protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 51  YTLTQINGQRIYRKATHAWTGPEPSRSCEVF 143
           Y L   +G  I+R  TH W  PE S SC  F
Sbjct: 206 YGLKMQSGANIFRDKTHRWYVPESSYSCSKF 236


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 286 CDSCLSKGTHPRFHPEKLIISLNSKSSPACWNRGTKLS 173
           CD+C ++  H + HP  L+  LNS  +  CW     LS
Sbjct: 89  CDTCDARN-HFQSHPASLLTDLNSIGNMTCWVSTPSLS 125


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 286 CDSCLSKGTHPRFHPEKLIISLNSKSSPACWNRGTKLS 173
           CD+C ++  H + HP  L+  LNS  +  CW     LS
Sbjct: 89  CDTCDARN-HFQSHPASLLTDLNSIGNMTCWVSTPSLS 125


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 138 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLM 230
           VF+G I +D  ED++  +F +AG +   +++
Sbjct: 20  VFVGNISYDVSEDTIRSIFSKAGNVLSIKMV 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,593
Number of Sequences: 27780
Number of extensions: 210260
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)