Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B20
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       34   0.002
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 643 SPXRGXPPPXXPQXPPPXXPPXXPPPXXPS 732
           +P RG PP    Q PPP  PP  PP   PS
Sbjct: 33  APQRGSPP-NPSQGPPPGGPPGAPPSQNPS 61



 Score = 27.5 bits (58), Expect = 0.19
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +2

Query: 611 PPRGXP-PXXXPXXSGGXPPRXAPKXXPXXPPPXPPP 718
           P  G P P   P  S   P R +P      PPP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.5 bits (58), Expect = 0.19
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 572 PPPXXXPXXPXPPPPRGXPPXXXPXXSGGXPPRXAPKXXP 691
           P P   P      P RG PP        G PP   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.75
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 PPKGXXPGXXPXXXPXPGGXPXXPP 573
           P +G  P   P   P PGG P  PP
Sbjct: 34  PQRGSPPN--PSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 0.99
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 640 PSPXRGXPPPXXPQXPPPXXP 702
           P+P +G PP   P  PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 608 PPPRGXPPXXXPXXSGGXPPRXAPKXXPXXPPPXPP 715
           P P+  P         G PP  +    P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 403  PPPPPPR 423
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 402 APPPPPP 422
           APPPPPP
Sbjct: 342 APPPPPP 348



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 403 PPPPPPRXXG 432
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 405  PPPPPPXXG 431
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 403  PPPPPPRXXG 432
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.156    0.569 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,407
Number of Sequences: 438
Number of extensions: 14570
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)