Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_B18
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 31 0.29
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 29 0.90
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 1.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 2.1
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 2.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 27 3.6
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 3.6
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 26 6.3
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 8.4
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 26 8.4
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 30.7 bits (66), Expect = 0.29
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 432 YRCDVCDLTFQAMDYLILHKKFHGNEKDLPIPPPE-QTSTKDAPKKR-RKFKCDQCDVKV 605
+ CD C F + L HK H + +P P E + KD K+ ++F D+ ++
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSVIEE 90
Query: 606 NSQYHLDIXQSKHEGAASKKYI 671
S+ LD+ + + + K +
Sbjct: 91 GSKDVLDVKAAASQQEDNMKIV 112
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 29.1 bits (62), Expect = 0.90
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 414 QQNESRYRCDVCDLTFQAMDYLILHKK 494
Q+N S+YRC CD F ++ + HK+
Sbjct: 13 QKNASKYRCPRCDSRFCCLECNLEHKR 39
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 417 QNESRYRCDVCDLTFQAMDYLILHKKFHGNEK 512
Q +Y C+ C F +++L H + H NEK
Sbjct: 65 QKVKQYVCETCTRAFARLEHLKRHIRSHTNEK 96
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 YRCDV--CDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKFKCDQC 593
Y+C V CD ++ + L HK HG+ + P P + + + ++C+ C
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYHK-LHGHCSPITTPTPAPIPHQGFVVENKPYRCEVC 404
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 384 NGENSYDMKRQQN--ESRYRCDVCDLTFQAMDYLILHKK 494
NG + + +Q N + +RCD CD+ F L HK+
Sbjct: 121 NGTSVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKR 159
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 516 LPIPPPEQTSTKDAPKKRRKFKCDQCDVKVNSQYHLDIXQ 635
LPIPP E+ P+ R F+ D +V + Y D +
Sbjct: 1930 LPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFRE 1969
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 415 CLFIS*EFSPLYSAIFSRFTVERSLLSLPAGSIML 311
C S +F+PL + IFS + R LS P+ S+ +
Sbjct: 150 CPLGSVQFNPLLAEIFSLYNTLRDGLSAPSNSVQV 184
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 405 MKRQQNESRYRCDV--CDLTFQAMDYLILHKKFHGNEK 512
++ NE + CD C F +L +HK+ H N K
Sbjct: 44 LRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVK 81
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 309 KSMMEPAGNDNSDRSTVKREKM-AEYNGENSYDMKRQQNESRYR 437
K + +P + N++ + ++ M A + YD ++++ S YR
Sbjct: 22 KVLEQPKNSSNTNEESSSQDNMKASFGSSKRYDERQKKKRSEYR 65
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +3
Query: 378 EYNGENSYDMKRQQNESRYRCDVCDL 455
E + +NS+ M +++E+ + C+VC +
Sbjct: 53 ENDRDNSHTMNSKRDEAGFACEVCQI 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,800
Number of Sequences: 5004
Number of extensions: 58184
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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