Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_B18
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1478 - 30420097-30420651 34 0.18
12_01_0454 + 3580332-3581714 33 0.31
01_05_0040 - 17492625-17492744,17493106-17493411 31 1.2
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 28 2.1
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512... 25 3.3
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 29 5.0
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 29 6.7
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.8
02_02_0281 + 8536494-8536920,8537184-8537338 28 8.8
>06_03_1478 - 30420097-30420651
Length = 184
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +3
Query: 417 QNESRYRCDVCDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKD----APKKRRKFKC 584
+ RY C +CD F + H + H + PP + S D A KR ++ C
Sbjct: 51 ERAGRYPCPLCDRHFPTEKAVHGHMRSHPGRGWRGMEPPREPSPGDLALAADGKRYRYVC 110
Query: 585 DQCDVKVNSQYHLDIXQSKH 644
D+C ++ L ++ H
Sbjct: 111 DRCKAPFETRQALGGHRASH 130
>12_01_0454 + 3580332-3581714
Length = 460
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +3
Query: 438 CDVCDLTFQAMDYLILHKKFHGNEKD----LPIPPPEQTSTKDAPKKRRKFKCDQCDVKV 605
C +C F+ L +H + HG+E L PPP + P+ R++ C K
Sbjct: 226 CGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKR 285
Query: 606 NSQY 617
N +
Sbjct: 286 NRMH 289
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 429 RYRCDVCDLTFQAMDYLILHKK-FHGNEKDLPIPPPEQTSTKDAPKK 566
R+ C C +F D L H F G+ LP PPP TS + K+
Sbjct: 341 RWLCS-CGTSFSRKDKLFAHVALFQGHAPALPPPPPPPTSGRRRHKQ 386
>01_05_0040 - 17492625-17492744,17493106-17493411
Length = 141
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 438 CDVCDLTFQAMDYLIL-HKK--FHGNEKDLPIPPPEQTSTKDAPKKRRK 575
CD + A++Y+IL HKK G D P+ PP K AP + K
Sbjct: 39 CDGLAVLGDAVEYIILWHKKDIIFGTSIDAPLKPPTPPQKKSAPHEVEK 87
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 28.3 bits (60), Expect(2) = 2.1
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 426 SRYRCDVCDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKK 566
+RY C+VC FQ L LH++ H +LP +++ST +A KK
Sbjct: 64 NRYICEVCHKGFQRDQNLQLHRRGH----NLPWKLKQRSST-EAKKK 105
Score = 20.6 bits (41), Expect(2) = 2.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 570 RKFKCDQCDVK 602
+K+KCD+C K
Sbjct: 140 KKWKCDRCSKK 150
>11_01_0639 -
5128139-5128159,5128237-5128329,5128431-5128491,
5128579-5128689,5128770-5129021,5129105-5129440,
5129486-5131140,5131316-5131555
Length = 922
Score = 25.4 bits (53), Expect(2) = 3.3
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 489 KKFHGNEKDLP-IPPPEQTSTKDAPKKRRK 575
KK G E D IPP E S + A KRRK
Sbjct: 63 KKGDGEEGDKDYIPPKEGKSERSAKAKRRK 92
Score = 22.6 bits (46), Expect(2) = 3.3
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = +3
Query: 555 APKKRRKFKCDQCDVKVNSQYHLDIXQSKHEGAASKKYIW 674
APK R QC + V + + + H K+ +W
Sbjct: 118 APKTARAKFSSQCGIIVREKISITVKDWDHVTDGDKEVLW 157
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 321 EPAGNDNSDRSTVKREKMAEYNGENSYDMKRQQNESRYRCDVCD 452
E + + + DR K E ++Y + D +RQ SRY D CD
Sbjct: 487 ERSSSRHDDRGYSKHESRSKYR-DGDDDYRRQSGGSRYGRDKCD 529
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +3
Query: 489 KKFHGNEKDLPIPPPEQTSTKD--APKKRRKFKCDQCDVKVNSQYHLDIXQSKHEGAASK 662
KK G E D PP++ + APK R QC + V + + H K
Sbjct: 63 KKGDGEEGDKDYIPPKEGPKGEPLAPKMARAKFSSQCGIIVRENISITVKDWDHVSDGDK 122
Query: 663 KYIW 674
+ +W
Sbjct: 123 EVLW 126
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 339 NSDRSTVKREKMAEYNGEN-SYDMKRQQNESRYRCDVCDLTFQAMDYLILHKKFH 500
+ DRS+V+ A+ + E + K +R+ C++C+ FQ L LH++ H
Sbjct: 16 DGDRSSVRSRGGADPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGH 70
>02_02_0281 + 8536494-8536920,8537184-8537338
Length = 193
Score = 28.3 bits (60), Expect = 8.8
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = +3
Query: 261 GQMEAKSGVGI-QDHWMKSMMEPAGNDNSDRSTVKREKMAEYN----GENSYDMKRQQNE 425
G ME + I QD ++ ++PA + S V AE N G D++
Sbjct: 25 GSMEDQKPAEISQDKVAETDIKPAVQTELETSPVANPNPAETNQYTDGVTYGDLETTDPG 84
Query: 426 SRYRCDVCDLTFQAMDYLILHKKFHGNE 509
+ YRC C Y++ HK G +
Sbjct: 85 TTYRCKRCRTLVATEGYVVTHKVGRGEK 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,682
Number of Sequences: 37544
Number of extensions: 391393
Number of successful extensions: 1244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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