Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B17
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.22 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.29 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    29   1.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   3.6  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    26   6.2  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 465 VTLINSIWTLLHYHKNAVQKVEKLMEQNHILEQNNKQLNS 584
           +TLI+++  L+H H N   KV +L E N  L  + K L S
Sbjct: 832 MTLIDNVQKLMHKHVNQESKVSELKEVNGKLSLDLKNLRS 871


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 608 FFFQFIYKGIQLLIVLFKDMVLLH*LFYLLYCILMIM 498
           F F F++   Q+ IV F    +LH LF+   C+ + +
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFL 167


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 650 RHNTRSSLTLFGAYFFFQFIYKGIQLL 570
           +H T+ S  +FG Y  F ++ KG+Q+L
Sbjct: 148 KHITKFSCEIFGLYVAFIYLEKGVQVL 174


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 282 EIKELLENYKHKRSSVYEPCKIGNIKECL 368
           +  ELL+NYK + +   E CK GN + C+
Sbjct: 185 DYSELLDNYKKQLNKASESCK-GNYQACI 212


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 525 VEKLMEQNHILEQNNKQLNSFVDKL 599
           + +L  +NH L+ +N QLN+ +D L
Sbjct: 327 IRRLALENHELKNSNNQLNNHIDDL 351


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 327 VYEPCKIGNIKECLIGLREELGVFNISYLFNPY 425
           VYE C    + +  +G      VF++S+L+NP+
Sbjct: 65  VYEICSRAWLVKLSLGAMSLCDVFHLSFLYNPF 97


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 448 KISSSISLYGLNK*LMLKTPSSSLNPIRHSL 356
           KIS  +SLYG+++ ++L+ P    N   H+L
Sbjct: 42  KISRIVSLYGIDEIILLEDPEYVQNTQVHTL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,026
Number of Sequences: 5004
Number of extensions: 54604
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)