Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B17
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0215 + 6505231-6505554,6506786-6507682                           32   0.53 
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637...    29   5.0  

>03_02_0215 + 6505231-6505554,6506786-6507682
          Length = 406

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +3

Query: 288 KELLENYKH-KRSSVYEPCKIGNIKECLIGLREELGVFNISYLFNPYNDIEDEI-LLPGS 461
           K LL+  K  K+SS   P +I         ++   G  NI      Y  +E E+  L   
Sbjct: 130 KHLLKTIKRRKKSSQESPSEIQKAP-----VKTAPGTENIE--IGKYGGLEKEVETLKRD 182

Query: 462 LVTLINSIWTLLHYHKNAVQKVEKLMEQNHILEQNNKQL 578
              L+  +  L HY + +  +V+ L+E+  ++EQN +Q+
Sbjct: 183 KALLMQQLVDLRHYQQTSNLEVQNLIERLQVMEQNQQQM 221


>01_03_0038 +
           11862743-11862884,11863145-11863704,11863733-11863777,
           11864174-11864563
          Length = 378

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +3

Query: 426 NDIEDEILLPGSLVTLINSIWTLL--HYHKNAVQKVEKLMEQNHILEQNNKQLNSFVDKL 599
           N ++  +++  S      +IW  L   Y +++   +  LM+Q H +EQN+  ++ +    
Sbjct: 97  NSVKHSLIVSLSKFQTAKAIWGSLKQRYVQDSGALLHTLMQQTHAIEQNDMSIDEYYSAF 156

Query: 600 XXXXXXXXXXTRACVVSA 653
                       AC  +A
Sbjct: 157 DRLMGSLTSMVPACTTAA 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,835
Number of Sequences: 37544
Number of extensions: 279233
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)