Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B17
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    34   0.002

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +3

Query: 279 DEIKELLEN-YKHKRSSVYEPCKIGNIKECLIGLREELG-VFNISYLFNPYNDIEDEILL 452
           D++  L++  +K+K   V E      +KE     + ++  V N+ Y  N  +  E+  +L
Sbjct: 38  DKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRDINDVLNVLYFINKNDKYEENTIL 97

Query: 453 PGSLVTLINSIWTLLHYHKNAVQKVEKLMEQNHILEQ 563
             ++  LIN +  L   HK   +K++K ME   I ++
Sbjct: 98  T-TMPLLINVVKYLGGKHKFISKKIKKTMENKDITKR 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,035
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)