Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B16
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    28   1.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    28   2.0  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   6.1  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 61  CLFXIQPQFLVLMTSSGNFSAFISLLLLVDI--SAGAP 168
           C+F +   FL+ MTS  N+  FI+L +L+ +  SA +P
Sbjct: 134 CVFLVIWGFLLCMTSVANYPGFIALRVLLGMMESAASP 171


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 398 PTLLTSMYSHKGRGMELSELIVYDGRLLTFDDR-SGMVFEIISNKMVPWLVLTDGNGHVE 574
           P +   +YS + RG + + ++    +   +  + SGMV ++ S   +  LV + G GH+ 
Sbjct: 18  PEIYEGLYSLQHRGQDAAGIVTAGNKGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLR 77

Query: 575 KGFKSEWAAMKDEILYIGS 631
                  A  + +  Y+ S
Sbjct: 78  YPTAGSCAHSEAQPFYVNS 96


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 620 YIGSMGKEWTTSSGEFENYDPM 685
           Y    G +W TSSG++ N+ P+
Sbjct: 325 YTAEQGCQWGTSSGDYGNWSPL 346


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 407 LTSMYSHKGRGMELSELIVYDGR 475
           L SMY H+   MEL+  +V DG+
Sbjct: 228 LCSMYVHEDADMELASKLVLDGK 250


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 257 RIGIVADLDTNSKSSTKAYSFHSYLKKGHLVYNRVKNSVT 376
           +I + A+L  ++   TKAY+ H Y+ + HL + + + + T
Sbjct: 176 KIAVTANLKLSNP--TKAYTNHFYILRSHLEWTKGRKAQT 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,741
Number of Sequences: 5004
Number of extensions: 70897
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)