Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_B16
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 31 1.2
02_03_0320 + 17677809-17677929,17678203-17678289,17678657-176787... 29 3.7
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 29 3.7
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 29 6.4
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406... 29 6.4
11_01_0409 - 3096372-3097052,3097324-3098652 28 8.5
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 28 8.5
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 28 8.5
>04_04_0418 +
25077748-25078101,25079413-25079538,25080683-25081593,
25081970-25082453
Length = 624
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 500 GMVFEIISNKMVPWLVLTDGNGHVEKGFKSEWAAM 604
G+V +++N++ PWL+L G+ GF + W A+
Sbjct: 74 GLVPGVLANRLPPWLILLIGSACALLGFGTLWLAV 108
>02_03_0320 +
17677809-17677929,17678203-17678289,17678657-17678763,
17679903-17679981,17680574-17680754,17681290-17681411,
17681541-17681677
Length = 277
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 642 SLPID---PMYRISSFIAAHSDLKPFST*PLPSVNTNHGTILLD 520
SLP+D P +S AH ++KPFS PLP T + +LL+
Sbjct: 73 SLPVDFPKPSDNENSVEVAHPNIKPFSVHPLPL--TKNSDVLLE 114
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 164 PPVIQWIHRTRQYNTTYPLTRPVIAGDYITFRIGIVADLDTNSKSSTKAYSFHSYLKKGH 343
PP + W+H + N ++ +I ++ DL NS S SF S LK H
Sbjct: 154 PPSLPWLHTLKYLNLSHNKLSGIIGDVFVNMESLGTMDLSFNSFSGDLPTSFSS-LKNLH 212
Query: 344 LVY 352
+Y
Sbjct: 213 HLY 215
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Frame = +2
Query: 434 RGMELSELIVYDGRLLTFDDRSGMVFEIISNKMVPWLVLTDGNG------HVEKGFKSEW 595
+G+E ++ V D L T +D+S V I++ + ++ + +G H++ G K+EW
Sbjct: 702 QGLETNQSPVGDLALATLEDQSNSVQPIVNVEEKFHILCSKDSGVLYEDPHIQIGLKAEW 761
Query: 596 AAMKDE-ILYIGS 631
A +L++G+
Sbjct: 762 RAHHGRLVLFLGN 774
>01_03_0304 -
14838977-14838988,14839291-14840302,14840414-14840609,
14840795-14841149
Length = 524
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +2
Query: 236 AGDYITFRIGIVADLDTNSKSSTKAYSFHSYLKKGHLVYNR-VKNSVTVTWDSQQPTLLT 412
AG Y R D + T + L H +NR + N +TV W +
Sbjct: 137 AGGYSCTRCPHGTSFDPAERKCTSTKQHNIVLGISH--FNRSLFNKITVKWKRGIQKKIR 194
Query: 413 SMYSHKGRGMELSELIVYD 469
Y HK +G+ L +LI D
Sbjct: 195 RDYFHKNKGLLLEQLISCD 213
>11_01_0409 - 3096372-3097052,3097324-3098652
Length = 669
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 332 KKGHLVYNRVKNSVTVTWDSQQPTLLTSMY 421
K+G +VYN + TV DSQ+ +LT Y
Sbjct: 423 KRGQIVYNHHQGHHTVIHDSQRNLVLTGPY 452
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 518 ISNKMVPWLVLTDGNGHVEKGFKSEWAAMKDEILYIGSMGKEWTTSSGEFENY 676
+S+K VP LV T + H E+ ++WA+ +++ IG + GE +Y
Sbjct: 427 MSSKAVPSLVSTGRSAHTERTRLNDWAS---KLMEIGEKMSVMVVNDGESISY 476
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 443 ELSELIVYDGRLLTFDDRSGMVFEIISNKMVPWLVLTDGNGHVEKGFKSEWAAMKDEILY 622
E+ +L GR+ + +VF + +N + D F WA M ++I
Sbjct: 357 EMLDLFFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISN 416
Query: 623 IGSMGKEWTTS 655
I S G +W S
Sbjct: 417 INSAGVDWERS 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,617
Number of Sequences: 37544
Number of extensions: 432866
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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