Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B13
         (972 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    57   6e-07
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   7e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.018
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    40   0.096
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.13 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    35   3.6  
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    34   4.8  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.3  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 57.2 bits (132), Expect = 6e-07
 Identities = 34/57 (59%), Positives = 35/57 (61%)
 Frame = -2

Query: 557 GAKPMEKTPANAAFXPVPWPFAGXLLTXSXXRYPLILWITVXPPLSELIPLAAAERP 387
           GA+PMEK        PV       LLT S   YPLILWITV PPLSEL PLAA ERP
Sbjct: 5   GAEPMEKR-LRCWLLPV----LCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 7e-05
 Identities = 24/37 (64%), Positives = 26/37 (70%)
 Frame = +3

Query: 312 RPTRGERRFAYMGALPLPRSLTRCARSFGCGERYQLT 422
           R  R   R    G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 22  RQHRRVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.018
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 101 DPXMIRYIDEFGQTTTRMQ 157
           DP MIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 39.9 bits (89), Expect = 0.096
 Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 351 ALPLPRSLTRCARSFGCGERYQL-TQRRXYGYPQNQGI 461
           ALPL RS TRC RS GCG      +  R YG PQ QG+
Sbjct: 283 ALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGM 320


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 22/40 (55%), Positives = 26/40 (65%)
 Frame = +3

Query: 225 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAY 344
           +++LT      L  RF V    V +ALMNRPTRGERRFAY
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAY 40


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 34.7 bits (76), Expect = 3.6
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 348 PYTQTASPRALADSLMQ 298
           P TQTASPRALADSLMQ
Sbjct: 332 PNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 34.3 bits (75), Expect = 4.8
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +2

Query: 419 HSKAVXRLSTESGDNAXXXM 478
           HSKAV RLSTESGDNA   M
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 259 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 95
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,522,128
Number of Sequences: 1657284
Number of extensions: 14908803
Number of successful extensions: 27742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27637
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 90631794594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)