Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B13
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   5.3  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 406 SPQPNDRAQRVSERGSGRAPIYANRLSPRVGRFINAEKTSHTSTLNL 266
           SPQP  R++      SGR+ + ++R S R   + N    S  S +++
Sbjct: 537 SPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISI 583


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +3

Query: 633 PRRFPPGXLPXXAXLVPTLPITGYCPLXSXPXGEXGGGFX*XPPPXGRVS 782
           P    P   P    + P  PI G  P    P G  G G    PPP   VS
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 21/71 (29%), Positives = 25/71 (35%)
 Frame = +3

Query: 660 PXXAXLVPTLPITGYCPLXSXPXGEXGGGFX*XPPPXGRVSPTFRGVGPXPXPTXGPFFX 839
           P  A +VPT       P+   P     GG    PPP G       G GP P P   P   
Sbjct: 735 PPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPG-----VAGAGPPPPPPPPPAVS 786

Query: 840 LXPXXF*SPXP 872
                + +P P
Sbjct: 787 AGGSRYYAPAP 797


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = -3

Query: 361 SGRAPIYANRLSPRVGRFINAEKTSHTSTLNLKHKMNAIVVVNLFIAAYNGYK*SNSITN 182
           S R P+   + +    R I+AE  S TST N +H     + +N  + + +  + +N I  
Sbjct: 518 SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIRQ 577

Query: 181 FTNKAFFSLHSS 146
             N +  ++ SS
Sbjct: 578 GANGSDSNMSSS 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,106
Number of Sequences: 5004
Number of extensions: 48912
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)